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Number of loci and SNPs of Nothoceros aenigmaticus for both dataset (exclusively United States and US plus Mexico), before and after filtering with the option populations of the Stacks pipeline (–max-het-obs 0 –min-maf 0.05 –R 0.5).
| Matrices | Prefilter | Post-filter | |||
| No. loci | No. SNPs | No. loci | No. SNPs | No. unlinked SNPs | |
| Mexico and US individuals | 6,157 | 1,399 | 2,402 | 669 | 491 |
| US individuals | 6,157 | 823 | 2,368 | 410 | 305 |
