Table 2.
SNPs associated with resistance to the isolates A2.6.0, P3.4.0, K5.1 and S10.2, revealed by GLM analysis with accounting of population structure (GLM + Q model)
| Isolate | p-value | Marker | Chr | Position | cM | Allele | Minor Allele | SNP associated with resistance |
|---|---|---|---|---|---|---|---|---|
| A2.6.0 | 1.01E-06 | JHI-Hv50k-2016-183207a | 3H | 490244247 | 52.6-54.8 | A/T | T(0.41) | T(0.75) |
| P3.4.0 | 8.11E-08 | SCRI_RS_239642a | 6H | 357492232 | 55.4 | A/G | A(0.22) | A(0.83) |
| P3.4.0 | 2.09E-07 | SCRI_RS_224389a | 6H | 360336381 | 55.4 | C/T | C(0.22) | C(0.83) |
| K5.1 | 5.89E-6 | JHI-Hv50k-2016-33160b | 1H | 441912080 | 57.3-58.2 | G/A | A(0.21) | G(0.95) |
| S10.2 | 1.82E-05 | JHI-Hv50k-2016-74407b | 2H | 31977763 | 23.2-23.8 | C/T | C(0.46) | T(0.68) |
| S10.2 | 2.89E-05 | BOPA1_5206–787b | 5H | 1154245 | NA | G/C | G(0.14) | C(1) |
| S10.2 | 4.95E-05 | JHI-Hv50k-2016-391875b | 6H | 142513704 | 52.6–53.8 | A/C | A(0.30) | C(1) |
| S10.2 | 4.95E-05 | BOPA2_12_30021b | 6H | 156957594 | A/G | A(0.30) | G(1) |
aSignificant SNPs according the Bonferroni correction
bSuggestive SNPs