Table 5.
Comparison of the regions associated with resistance to P. teres f. teres, identified in the current study and previous studies
| chr | Isolate | p-value | Marker | cM | Previuosly identified QTLs (cM) |
|---|---|---|---|---|---|
| 1H | P3.4.0 | 4.35E-05 | JHI-Hv50k-2016-33086b | 57.3-62.8 |
(52.4-56.8 cM) Grewal et al., 2012 [10]; (50–86 cM) Afanasenko et al., 2014 [2]; (92.2 cM) Amezrou et al., 2018 [8]; (95.9 cM) Vatter et al. 2017 [18] |
| P3.4.0 | 5.54E-05 | JHI-Hv50k-2016-33097b | |||
| P3.4.0 | 7.32E-05 | JHI-Hv50k-2016-33099b | |||
| P3.4.0 | 7.32E-05 | JHI-Hv50k-2016-33104b | |||
| P3.4.0 | 5.54E-05 | JHI-Hv50k-2016-33109b | |||
| P3.4.0 | 9.74E-05 | JHI-Hv50k-2016-33120b | |||
| K5.1 | 1.45E-04 | JHI-Hv50k-2016-33160c | |||
| P3.4.0 | 9.13E-06 | JHI-Hv50k-2016-35839b | |||
| P3.4.0 | 1.01E-04 | JHI-Hv50k-2016-36398b | |||
| 2H | S10.2 | 1.82E-05 | JHI-Hv50k-2016-74407c | 23.2-23.8 |
(10-28.7 cM) Wonneberger et al., 2017 [7]; (8 cM, 23 cM) Vatter et al. 2017 [18] |
| P3.4.0 | 2.59E-05 | JHI-Hv50k-2016-104508b | 71.0-74.1 |
(48 cM) Arru et al., 2003 [11]; (50–51 cM) Grewal et al., 2008 [5]; (54.2–55.4 cM) Steffenson et al., 1996 [3]; (55.5 cM) Vatter et al. 2017 [18]; (62.7 cM) Cakir et al., 2011 [26]; (51–75 cM) Afanasenko et al., 2014 [2]; (75–80 cM) König et al., 2014 [25]; (57.15, 59.35 cM and 92.22 cM) Amezrou et al., 2018 [8]; (120.04–125.35 сМ) Richards et al., 2016 [17] |
|
| P3.4.0 | 2.59E-05 | JHI-Hv50k-2016-104565b | |||
| P3.4.0 | 2.59E-05 | JHI-Hv50k-2016-104567b | |||
| P3.4.0 | 2.59E-05 | JHI-Hv50k-2016-104667b | |||
| P3.4.0 | 2.82E-05 | JHI-Hv50k-2016-104669b | |||
| P3.4.0 | 1.58E-06 | BOPA2_12_31445a | |||
| P3.4.0 | 2.30E-07 | JHI-Hv50k-2016-104859a | |||
| 3H | P3.4.0 | 4.77E-05 | JHI-Hv50k-2016-156539b | 12.1-17.4 | (8.5 cM) Vatter et al. 2017 [18]; |
| P3.4.0 | 4.77E-05 | JHI-Hv50k-2016-156576b | |||
| P3.4.0 | 4.77E-05 | JHI-Hv50k-2016-156584b | |||
| P3.4.0 | 6.66E-05 | JHI-Hv50k-2016-156586b | |||
| P3.4.0 | 4.64E-05 | JHI-Hv50k-2016-156591b | |||
| P3.4.0 | 6.58E-05 | JHI-Hv50k-2016-156594b | |||
| A2.6.0 | 2.08E-06 | JHI-Hv50k-2016-169338c | 50.9-54.8 |
(52.6-54.8 cM) Koladia et al.,2017 [9]; (51.6 cM) Vatter et al. 2017 [18]; (46.2–54.5 cM) Wonneberger et al., 2017 [7] |
|
| A2.6.0 | 5.96E-06 | SCRI_RS_186341c | |||
| A2.6.0 | 1.01E-06 | JHI-Hv50k-2016-183207a | |||
| K5.1 | 1.41E-04 | JHI-Hv50k-2016-215624c | 135.6-137.5 |
(115–119 cM) Grewal et al., 2008 [5]; (112–150 cM) Afanasenko et al., 2014 [2]; (137,6 cM) Amezrou et al., 2018 [8] |
|
| 6H | P3.4.0 | 1.60E-05 | SCRI_RS_138529b | 52.6-55.4 |
(50.8–66.4) Wonneberger et al., 2017 [7]; (50.2–58.4 cM) Koladia et al., 2017 [9]; (58 cM) Afanasenko et al., 2014 [2]; (60–65 cM) König et al., 2014 [25]; (75–78 cM) Grewal et al., 2008 [5] |
| S10.2 | 2.38E-06 | JHI-Hv50k-2016-391875c | |||
| S10.2 | 2.20E-06 | JHI-Hv50k-2016-392656c | |||
| S10.2 | 1.10E-05 | JHI-Hv50k-2016-392723c | |||
| S10.2 | 2.38E-06 | BOPA2_12_30021c | |||
| S10.2 | 1.10E-05 | JHI-Hv50k-2016-393052c | |||
| P3.4.0 | 3.24E-08 | SCRI_RS_239642a | |||
| K5.1 | 3.14E-05 | SCRI_RS_239642c | |||
| P3.4.0 | 1.60E-05 | JHI-Hv50k-2016-398663b | |||
| P3.4.0 | 7.59E-05 | JHI-Hv50k-2016-398720b | |||
| P3.4.0 | 4.84E-08 | SCRI_RS_224389a | |||
| P3.4.0 | 7.59E-05 | JHI-Hv50k-2016-398886b | |||
| P3.4.0 | 7.59E-05 | JHI-Hv50k-2016-398894b |
aSignificant SNPs according the Bonferroni correction
bSignificant SNPs according the FDR
cSuggestive SNPs
Our loci that were confirmed by literature data are in bold