Table 3.

Mean accuracy increase of NetSparse relative to each other method and its standard error on the mean calculated over ten replicates each, times 100

Scenario	GBLUP	BayesB	GBLUP-AD	BayesB-AD	GBLUP-ADAA
Base	$1.2\pm 0.6$	$1.0\pm 0.5$	$\mathit{2.2}\pm \mathit{0.7}$	$\mathit{3.3}\pm \mathit{0.6}$	$\mathit{2.5}\pm \mathit{0.6}$
$S_{10}$	$\mathit{27.7}\pm \mathit{1.6}$	$\mathit{6.7}\pm \mathit{0.8}$	$\mathit{28.1}\pm \mathit{1.5}$	$\mathit{9.3}\pm \mathit{1.1}$	$\mathit{28.5}\pm \mathit{1.4}$
$S_{100}$	$\mathit{5.2}\pm \mathit{1.1}$	$\mathit{2.4}\pm \mathit{0.7}$	$\mathit{5.8}\pm \mathit{1.1}$	$\mathit{5.4}\pm \mathit{0.7}$	$\mathit{6.1}\pm \mathit{1.1}$
$S_{1000}$	$-0.0\pm 0.2$	$\mathit{1.1}\pm \mathit{0.3}$	$0.3\pm 0.2$	$\mathit{3.0}\pm \mathit{0.7}$	$0.4\pm 0.3$
$D_{\text{medium}}$	$\mathit{0.8}\pm \mathit{0.3}$	$0.6\pm 0.5$	$0.0\pm 0.5$	$0.8\pm 0.6$	$0.4\pm 0.5$
$D_{\text{extreme}}$	$\mathit{0.6}\pm \mathit{0.8}$	$0.6\pm 0.6$	$-6.3\pm 0.6$	$-6.1\pm 0.7$	$-5.8\pm 0.7$
$E_A$	$\mathit{0.7}\pm \mathit{0.2}$	$0.6\pm 0.7$	$\mathit{1.4}\pm \mathit{0.4}$	$\mathit{3.2}\pm \mathit{0.6}$	$\mathit{1.3}\pm \mathit{0.5}$
$E_C$	$0.6\pm 0.4$	$\mathit{0.9}\pm \mathit{0.3}$	$0.9\pm 1.0$	$1.5\pm 1.1$	$1.0\pm 1.0$
$E_I$	$\mathit{1.5}\pm \mathit{0.5}$	$\mathit{1.5}\pm \mathit{0.4}$	$\mathit{2.8}\pm \mathit{0.6}$	$\mathit{3.9}\pm \mathit{0.6}$	$\mathit{2.7}\pm \mathit{0.6}$

Significant entries, determined with the Benjamini-Hochberg procedure for $\alpha =0.05$ for the one-sided paired t-test corresponding to the hypotheses $\mathbb{E}\left({\rho }_{\text{NetSparse}},-,{\rho }_{\text{Method}}\right)=0$, are marked in italic