Table 1.
Comparison of homology among open‐reading frames of SARS‐COV‐2 isolate strains
| Region (ORF) | Nucleotide (nt) | Amino acid (aa) | ||||
|---|---|---|---|---|---|---|
| Start and end | Length | Homology (%) a | Start and end | Length | Homology (%) a | |
| Full length | 1‐29870 | 29 870 | 99.99 (99.91‐100) | 1‐9744 | 9744 | 99.99 (99.79‐100) |
| 1ab | 266‐21555 | 21 306 | 100 (99.91‐100) | 1‐7096 | 7096 | 100 (99.80‐100) |
| 1a | 266‐13483 | 13 218 | 99.99 (99.88‐100) | 1‐4401 | 4401 | 100 (99.73‐100) |
| 1b | 13468‐21555 | 8088 | 100 (99.93‐100) | 4402‐7096 | 2695 | 100 (99.85‐100) |
| S | 21563‐25384 | 3822 | 100 (99.82‐100) | 7097‐8369 | 1273 | 100 (99.53‐100) |
| 3a | 25393‐26220 | 828 | 100 (99.76‐100) | 8370‐8644 | 275 | 100 (99.27‐100) |
| E | 26245‐26472 | 228 | 100 (100‐100) | 8645‐8719 | 75 | 100 (100‐100) |
| M | 26523‐27191 | 669 | 100 (99.70‐100) | 8720‐8941 | 222 | 100 (99.95‐100) |
| 6 | 27202‐27387 | 186 | 100 (100‐100) | 8942‐9002 | 61 | 100 (100‐100) |
| 7a | 27394‐27759 | 366 | 100 (99.73‐100) | 9003‐9123 | 121 | 100 (99.17‐100) |
| 7b | 27756‐27887 | 132 | 100 (100‐100) | 9124‐9166 | 43 | 100 (100‐100) |
| 8 | 27894‐28259 | 366 | 100 (99.45‐100) | 9167‐9287 | 121 | 100 (98.35‐100) |
| N | 28274‐29533 | 1260 | 100 (99.84‐100) | 9288‐9706 | 419 | 100 (99.76‐100) |
| 10 | 29558‐29674 | 117 | 100 (99.15‐100) | 9707‐9744 | 38 | 100 (97.37‐100) |
Abbreviations: E, Envelope; M, Membrane; N, Nucleoprotein; ORF, open‐reading frame; S, Spike; SARS‐COV‐2, severe acute respiratory syndrome coronavirus 2; 1ab, open‐reading frames 1ab; 1a, open‐reading frames 1a; 1b, open‐reading frames 1b; 3a, open‐reading frames 3a; 6, open‐reading frames 6; 7a, open‐reading frames 7a; 7b, open‐reading frames 7b; 8, open‐reading frames 8; 10, open‐reading frames 10.
a
Median (min‐max).