Table 1.
Metadata of samples used in the study.
| Sample | Number of cells | Mean Reads per Cell | Median Genes per Cell | Number of Reads | Sequencing Saturation | Reads Mapped Confidently to Genome | Fraction Reads in Cells | Total Genes Detected | Median UMI per Cell |
|---|---|---|---|---|---|---|---|---|---|
| ETV6-RUNX1_1 | 2,776 | 76,003 | 1,830 | 210,987,037 | 84.0% | 92.0% | 89.8% | 18,397 | 5,312 |
| ETV6-RUNX1_2 | 6,274 | 52,662 | 1,239 | 330,404,706 | 87.9% | 90.5% | 85.1% | 20,005 | 2,435 |
| ETV6-RUNX1_3 | 3,862 | 85,994 | 1,181 | 332,110,056 | 90.3% | 85.3% | 80.8% | 19,909 | 2,815 |
| ETV6-RUNX1_4 | 5,069 | 59,411 | 1,304 | 301,155,525 | 84.3% | 83.5% | 88.3% | 19,414 | 3,940 |
| HHD_1 | 3,728 | 83,388 | 1,579 | 310,871,911 | 78.3% | 89.1% | 77.1% | 19,061 | 4,712 |
| HHD_2 | 5,013 | 64,741 | 2,059 | 324,551,184 | 73.4% | 87.1% | 93.3% | 20,798 | 5,643 |
| PRE-T_1 | 2,959 | 109,972 | 2,114 | 325,408,071 | 80.5% | 85.3% | 74.9% | 19,775 | 6,309 |
| PRE-T_2 | 2,748 | 118,053 | 1,685 | 324,412,280 | 86.1% | 86.7% | 81.8% | 20,568 | 5,037 |
| PBMMC_1 | 1,612 | 303,228 | 880 | 488,803,883 | NA | NA | 78.5% | NA | 2,573 |
| PBMMC_2 | 3,105 | 101,124 | 1,091 | 313,990,607 | 81.0% | 79.2% | 79.9% | 19,927 | 6,408 |
| PBMMC_3 | 2,229 | 145,472 | 1,085 | 324,258,554 | 91.4% | 87.1% | 61.6% | 18,793 | 3,008 |