Table 1.
Summary of TAms discovered from cultured microorganisms
| Source organism | (S)/(R) | Comments | Reference |
|---|---|---|---|
| Activity-guided approach | |||
| Klebsiella pneumoniae JS2F | (S) | Enrichment media used with 1-PEA as SNS | Shin and Kim (1997) |
| Bacillus thuringiensis JS64 | (S) | ||
| V. fluvialis JS17 | (S) | Enrichment media used with 1-PEA as SNS |
Shin and Kim (1999) Shin et al. (2001) |
| Arthrobacter sp. KNK168 | (R) | Enrichment media with 3,4-dimethoxyamphetamine as SNS |
Iwasaki et al. (2003) Iwasaki et al. (2012) |
| Pseudomonas sp. KNK425 | (S) | ||
| Alcaligenes denitrificans Y2k-2 | (S) | Enrichment media with β-amino-n-butyric acid as SNS | Yun et al. (2004) |
| Mesorhizobium sp. LUK | (S) | Enrichment media with a substituted β-amino-3-phenylpropionic acid | Kim et al. (2007) |
| Bacillus megaterium SC6394 | (S) | Enrichment media used with 1-cyclopropylethylamine as SNS | Hanson et al. (2008) |
| Moraxella lacunata WZ34 | (S) | Enrichment media used with alaninol as SNS | Chen et al. (2008) |
| Capsicum | (S) | Discovered through metabolic function analysis | Lang et al. (2009); Weber et al. (2014) |
| Janibacter terrae DSM13953 | (S) | GC-based assay screening whole cell preparations against 1-PEA | Clay et al. (2010) |
| Pseudomonas cichorii DSM 50259 | (S) | ||
| P seudomonas fluorescens ATCC49838 | (S) | ||
| Pseudomonas fluorescens KNK08–18 | (S) | Enrichment media with 7-methoxy-2-aminotetraline as SNS | Ito et al. (2011) |
| Pseudomonas sp. ACC | (S) | Enrichment media used with 12-aminododecanoic acid as SNS | Wilding et al. (2015); Wilding et al. (2016) |
| Curtobacterium pusillum | (R) | Pavkov-Keller et al. (2016) | |
| Microbacterium ginsengisoli | (R) | ||
| Pseudomonas putida NBRC14164 | (S) | Enrichment media with 1-PEA as SNS | Wu et al. (2017) |
| Bacillus halotolerans | (S) |
Enrichment media with 1-PEA as SNS Strain isolated from a petroleum refinery |
Noshahri et al. (2019) |
| Bacillus subtilis subsp. stercoris | (S) |
Enrichment media used with 1-PEA as SNS Strain isolated from an oil field |
|
| Bacillus subtilis subsp. inaquosorum | (S) | ||
| Bacillus endophyticus | (S) | ||
| Rhizobium radiobacter | (S) | ||
| Sequence homology | |||
| Chromobacterium violaceum DSM30191 | (S) | Homologous sequence searching with Vf-TAm | Kaulmann et al. (2007) |
| Pseudomonas aeruginosa | (S) | Ingram et al. (2007) | |
| Arthrobacter citreus | (S) | Martin et al. (2007) | |
| Caulobacter crescentus | (S) | Homologous sequence searching with A. denitrificans TAm | Hwang et al. (2008) |
| Rhodobacter sphaeroides | (S) | Schätzle et al. (2009) | |
| Paracoccus denitrificans | (S) | Homologous sequence searching with Vf-TAm | Park et al. (2010) |
| Polaromonas sp. JS666 | (S) | Homologous sequence searching with Mesorhizobium TAm | Bea et al. (2011) |
| Ochrobactrum anthropi | (S) | Homologous sequence searching with Pd-TAm | Park et al. (2012) |
| Acinetobacter baumannii | (S) | ||
| Acetobacter pasteurianus | (S) | ||
| Burkholderia vietnamensis | (S) | Homologous sequence searching with Vf-TAm | Jiang et al. (2014) |
| Halomonas elongata | (S) |
Homologous sequence searching with Vf- TAm First TAm characterized from halophilic bacteria |
Cerioli et al. (2015) |
| Burkholderia graminis | (S) | Mathew et al. (2015) | |
| Thermomicrobium roseum | (S) | From thermophilic bacterium | Mathew et al. (2016a) |
| Sphaerobacter thermophilus | (S) |
Homologous sequence searching with Polaromonas-TAm From thermophilic bacterium |
Mathew et al. (2016b) |
| Geobacillus thermodenitrificans | (S) |
Homologous sequence searching with Vf- TAm From thermophilic bacterium |
Chen et al. (2016) |
| Bacillus megaterium | (S) | Homologous sequence searching with EcK12-TAm | Slabu et al. (2016) |
| Bacillus mycoides | (S) | Homologous sequence searching with EcK12-TAm | Slabu et al. (2016) |
| Fusarium oxysporum | (R) | Gao et al. (2017) | |
| Halomonas sp. CSM-2 | (S) | Kelly et al. (2017) | |
| Halorubrum sp. CSM-61 | (R) | First haloarchaeal TAm characterized for biocatalysis | Kelly et al. (2019a, b) |
| Rhodospirillaceae bacterium | (S) | Homologous sequence searching with Polaromonas-TAm | Kim et al. (2019a, b) |
| Labrenzia sp. LAB | (S) | ||
| Afipia sp. P52–10 | (S) | ||
| Oceanibaculum indicum | (S) | ||
| Ilumatobacter coccineus | (S) | ||
| Variovorax sp. KK3 | (S) | ||
| Paraburkholderia caribensis | (S) | ||
| Hydrogenophaga palleronii | (S) | ||
| Solirubrobacter soli | (S) | Homologous sequence searching with Ilumatobacter-TAm | |
| Kineosporia sp. R_H_3 | (S) | ||
| Roseomonas deserti | (S) | ||
| Sinorhizobium meliloti | (S) | ||
| Bosea lupine | (S) | ||
| Bosea vaviloviae | (S) | ||
| Pseudacidovorax intermedius | (S) | ||
| Burkholderia sp. UYPR1.413 | (S) | ||
| Key motif-based search | |||
| Aspergillus terreus | (R) | Fungal source | Höhne et al. (2010) |
| Penicillium chrysogenum | (R) | ||
| Aspergillus oryzae | (R) | ||
| Aspergillus fumigatus | (R) | ||
| Neosartorya fischeri | (R) | ||
| Gibberella zeae | (R) | ||
| Hyphomonas neptunium | (R) | Isolated from seawater | |
| Mycobacterium vanbaalenii | (R) |
Actinobacteria First isolated from petroleum-contaminated estuarine sediments |
|
| Mesorhizobium loti 1 | (R) | ||
| Mesorhizobium loti 2 | (R) | ||
| Marinomonas sp. | (R) | ||
| Rhizobium etli | (R) | ||
| Rhodoferax ferrireducens | (R) | ||
| Jannashcia sp. | (R) | ||
| Labrenzia alexandrii | (R) | ||
| Burkholderia sp. | (R) | ||
| Gamma proteobacterium | (R) | ||
| Nectria haematococca | (R) | Fungal source | Sayer et al. (2014) |
| Escherichia coli K12 | (S) | ygjG gene | Slabu et al. (2016) |
| Capronia semiiersa | (R) | Iglesias et al. (2017) | |
| Pseudomonas putida | (S) | Galman et al. (2017) | |
| Pseudomonas fluorescens | (S) | ||
| Pseudomonas chlororaphis | (S) | ||
| Actinobacter sp. | (R) | Tang et al. (2019) | |
| Protein structure-based search | |||
| Silicibacter pomeroyi | (S) | Steffen-Munsberg et al. (2013) | |
| Rhodobacter sphaeroides KD131 | (S) | ||
| Ruegeria sp. TM1040 | (S) | ||
| Mesorhizobium loti MAFF30399 | (S) | ||
| Bacillus anthracis | (S) | Steffen-Munsberg et al. (2016) | |
SNS sole nitrogen source