Table 2.
Significant SNPs associated with Soil-borne wheat mosaic virus resistance and their corresponding annotated genes.
| SNP Name | SNP Position | MAFa | Orthologous gene | FDRb |
|---|---|---|---|---|
| BS00013935_51 | 5D.480829545 | 0.35 | Intergenic region | 8.55E-5 |
| BobWhite_c13030_406 | 5D.549670218 | 0.26 | TraesCS5D01G529700 | 7.89E-21 |
| CAP12_c5949_104 | 5D.550233279 | 0.31 | TraesCS5D01G530200 | 2.16E-20 |
| BS00079676_51 | 5D.550234521 | 0.33 | TraesCS5D01G530300 | 1.05E-19 |
| D_GA8KES401AL4GG_122 | 5D.550235948 | 0.31 | TraesCS5D01G530300 | 2.93E-20 |
| RAC875_c13169_459 | 5D.550235521 | 0.31 | TraesCS5D01G530300 | 5.32E-20 |
| BS00105939_51 | 5D.550235127 | 0.30 | TraesCS5D01G530400 | 1.28E-19 |
| BobWhite_c4438_162 | 5D.550272236 | 0.32 | TraesCS5D01G530600 | 4.72E-20 |
| BS00088587_51 | 5D.550272456 | 0.31 | TraesCS5D01G530600 | 2.34-20 |
| BS00088592_51 | 5D.550272362 | 0.37 | TraesCS5D01G530600 | 3.15E-16 |
| Excalibur_c687_886 | 5D.550271002 | 0.29 | TraesCS5D01G530600 | 1.40E-21 |
| Excalibur_c687_907 | 5D.550271023 | 0.31 | TraesCS5D01G530600 | 2.00E-20 |
| Excalibur_c687_961 | 5D.550271077 | 0.31 | TraesCS5D01G530600 | 3.91E-20 |
| IACX10520 | 5D.550272436 | 0.31 | TraesCS5D01G530600 | 2.00E-20 |
| Kukri_c1073_91 | 5D.550271228 | 0.31 | TraesCS5D01G530600 | 1.74E-20 |
| Kukri_c7786_81 | 5D.550241671 | 0.33 | TraesCS5D01G530600 | 2.22E-19 |
| wsnp_JD_c4438_5567834 | 5D.550272167 | 0.31 | TraesCS5D01G530600 | 2.00E-20 |
| wsnp_JD_c4438_5567972 | 5D.550272029 | 0.31 | TraesCS5D01G530600 | 2.39E-20 |
| wsnp_JD_c4438_5568170 | 5D.550271831 | 0.31 | TraesCS5D01G530600 | 5.22E-20 |
| D_GDS7LZN01CBWNE_99 | 5D.550282662 | 0.31 | TraesCS5D01G530700 | 2.92E-20 |
| Kukri_c5528_603 | 5D.550285051 | 0.31 | TraesCS5D01G530700 | 1.74E-20 |
| BS00073116_51 | 5D.550445864 | 0.35 | TraesCS5D01G531100 | 4.36E-18 |
| BS00011469_51 | 5D.550488971 | 0.34 | TraesCS5D01G531200 | 1.24E-18 |
| Excalibur_c14043_548 | 5D.550491920 | 0.38 | TraesCS5D01G531200 | 1.82E-15 |
| Excalibur_c28592_173 | 5D.550491839 | 0.36 | TraesCS5D01G531200 | 2.35E-18 |
| Excalibur_c28592_377 | 5D.550491410 | 0.36 | TraesCS5D01G531200 | 5.53E-18 |
| Excalibur_c42190_383 | 5D.550487798 | 0.36 | TraesCS5D01G531200 | 2.96E-18 |
| Excalibur_c2795_1518 | 5D.550503097 | 0.20 | TraesCS5D01G531300 | 3.15E-08 |
| BS00067308_51 | 5D.550837863 | 0.32 | TraesCS5D01G531900 | 9.53E-22 |
| BS00011794_51 | 5D.550854024 | 0.29 | TraesCS5D01G532100 | 4.09E-22 |
| BS00022036_51 | 5D.550854228 | 0.32 | TraesCS5D01G532100 | 1.66E-21 |
| CAP7_rep_c12715_390 | 5D.550853989 | 0.32 | TraesCS5D01G532100 | 7.89E-21 |
| CAP8_c145_89 | 5D.550893835 | 0.30 | TraesCS5D01G532100 | 4.09E-22 |
| wsnp_CAP11_c209_198671 | 5D.550854078 | 0.32 | TraesCS5D01G532100 | 1.66E-21 |
| Excalibur_c22724_85 | 5D.550362064 | 0.31 | TraesCS5D01G625100LC | 1.74E-20 |
aMinor allele frequency. badjusted P value.