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. 2020 May 16;9(3):130–138. doi: 10.1302/2046-3758.93.BJR-2019-0137.R1

Table V.

Common gene ontology terms and pathways identified by comparing the gene ontology and pathway enrichment analysis results of transcriptome-wide association studies and messenger RNA expression profiles for knee osteoarthritis.

Category Tissue Name PTWAS* PmRNA
GO Skeletal muscle GO:0005515~protein binding < 0.001 < 0.001
Blood GO:0005515~protein binding < 0.001 < 0.001
GO:0005737~cytoplasm < 0.001 0.005
GO:0070062~extracellular exosome 0.002 < 0.001
GO:0015629~actin cytoskeleton 0.014 0.026
GO:0006468~protein phosphorylation 0.017 0.033
GO:0060333~interferon-gamma-mediated signalling pathway 0.017 0.047
GO:0046982~protein heterodimerization activity 0.033 0.025
Pathway Skeletal muscle hsa04610:Complement and coagulation cascades 0.017 0.001
Blood hsa05416:Viral myocarditis 0.009 0.050
*

Each PTWAS value was calculated by gene ontology and pathway analysis using DAVID for the significant genes identified by transcriptome-wide association study analysis.

Each PmRNA value was calculated by gene ontology and pathway analysis using DAVID for the significant genes identified by messenger RNA expression profiles.

GO, gene ontology; mRNA, messenger RNA; TWAS, transcriptome-wide association study.