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. 2020 Apr 13;48(9):5024–5036. doi: 10.1093/nar/gkaa225

Table 1.

Mechanical parameters of A-tracts and control molecules obtained in this work. Mechanical parameters from AFM data were calculated from the fits to the Inline graphic data presented in Figure 2D and Supplementary Figure S5. Errors are the error of the fit. AFM imaging conditions are described in the Materials and Methods section. Mechanical parameters from MT and OT data are the average of the parameters obtained for each molecule and the errors are the standard deviation of the mean. For MT measurements, Inline graphic and Inline graphic were obtained by fitting the data to Equation (7) in the F < 1 pN regime. For OT measurements, Inline graphic and Inline graphic were extracted by fitting the data to Equation (8) in the 1 pN < Inline graphic < 10 pN force range. Inline graphic and Inline graphic were calculated by fitting the OT data to Equation (9) in the 10–45 pN force range. N denotes the number of molecules

Atomic force microscopy
Imaging conditions Molecule Inline graphic (nm) Inline graphic (nm) Inline graphic (nm) Inline graphic (μm−1) # Traces
Air imaging Mg2+ A-tract 871 ± 27 (N = 43) 23 ± 1 55 ± 1 17 ± 1 178
Control 898 ± 21 (N = 44) 54 ± 1 122
Air imaging Mg2+ & Ni2+ A-tract 889 ± 28 (N = 41) 24 ± 1 53 ± 1 17 ± 1 141
Control 902 ± 24 (N = 38) 47 ± 1 89
Liquid imaging Mg2+ & Ni2+ A-tract 858 ± 46 (N = 40) 18 ± 4 47 ± 3 18 ± 1 180
Control 886 ± 53 (N = 43) 50 ± 1 163
Magnetic tweezers
[NaCl] (mM) Molecule Inline graphic (nm) Inline graphic (nm) Inline graphic (nm) Inline graphic (pN) N
1 A-tract 1921 ± 31 22 ± 1 14
Control 1945 ± 31 49 ± 1 15
10 A-tract 1910 ± 14 19 ± 1 25
Control 1940 ± 22 45 ± 1 18
100 A-tract 1946 ± 16 15 ± 1 28
Control 1866 ± 20 44 ± 1 20
500 A-tract 2039 ± 20 12 ± 1 29
Control 1923 ± 19 41 ± 1 19
Optical tweezers
[NaCl] (mM) Molecule Inline graphic (nm) Inline graphic (nm) Inline graphic (nm) Inline graphic (pN) N
50 A-tract 1890 ± 7 20 ±1 38 ± 3 2560 ± 260 9
Control 1833 ± 7 42 ± 2 49 ± 5 1680 ± 80 10
100 A-tract 1872 ± 16 20 ± 2 44 ± 3 2400 ± 220 15
Control 1836 ± 3 42 ± 2 47 ± 4 1540 ± 90 17
500 A-tract 1839 ± 3 21 ± 1 37 ± 3 2390 ± 190 17
Control 1830 ± 3 41 ± 3 49 ± 4 1560 ± 100 13