Table 2.
Summary of the domain assembly performance using for domain assembly methods on the 73 proteins in AIDA dataset. The top 1 model and top 5 models are determined based on Qprob ranking.
| Method | Top 1 model | Best in top 5 models | Best in all 50 models | P-value | ||||
|---|---|---|---|---|---|---|---|---|
| TM-score | RMSD | TM-score | RMSD | TM-score | RMSD | TM-score | RMSD | |
| AIDA | 0.716 | 9.135 | 0.767 | 6.444 | 0.810 | 4.438 | 1.00E+00 | 0.9999 |
| Modeller | 0.620 | 16.207 | 0.622 | 15.349 | 0.621 | 14.953 | 2.20E-16 | 2.20E-16 |
| SAXSDom-abinitio | 0.705 | 9.005 | 0.724 | 6.917 | 0.742 | 5.811 | 5.60E-08 | 1.98E-08 |
| SAXSDom | 0.722 | 7.658 | 0.750 | 5.987 | 0.767 | 5.012 | ||