Table 1.
Sucrose nonfermenting 1 (SNF1)-related protein kinases (SnRKs) genes and corresponding protein properties in strawberry.
| Gene Name | Gene Id | Chr. | Locus | ORF (bp) | Amino Acid (aa) | MW (kDa) | pI | Instability Index | Aliphatic Index | GRAVY | SignalP | TMH | Location |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FvSnRK1.1 | gene04397 | chr6 | 32622471..32625872+ | 1557 | 518 | 59.19 | 8.68 | 48.23 (unstable) | 88.78 | −0.313 | no | 0 | a, b |
| FvSnRK2.1 | gene11031 | chr5 | 16681534..16684843+ | 1059 | 352 | 40.40 | 6.12 | 44.84 (unstable) | 82.78 | −0.511 | no | 0 | a, b |
| FvSnRK2.2 | gene10769 | chr5 | 23595280..23598224+ | 1014 | 337 | 38.04 | 5.85 | 35.42 (stable) | 86.20 | −0.399 | no | 0 | a, b |
| FvSnRK2.3 | gene31902 | chr2 | 12574424..12578412+ | 1092 | 363 | 41.23 | 4.88 | 41.24 (unstable) | 88.35 | −0.316 | no | 0 | a, b |
| FvSnRK2.4 | gene06595 | chr4 | 14755025..14756119+ | 1095 | 364 | 41.48 | 9.10 | 45.92 (unstable) | 82.17 | −0.429 | no | 0 | a, b |
| FvSnRK2.5 | gene16244 | chr1 | 13571546..13573722+ | 1014 | 337 | 38.38 | 5.18 | 33.76 (stable) | 90.50 | −0.286 | no | 0 | a, b |
| FvSnRK2.6 | gene11971 | chr5 | 12304605..12307049− | 1014 | 337 | 38.10 | 5.76 | 36.88 (stable) | 89.91 | −0.242 | no | 0 | a, b |
| FvSnRK2.7 | gene11970 | chr5 | 12295362..12297597− | 963 | 320 | 36.30 | 8.76 | 37.85 (stable) | 91.34 | −0.253 | no | 0 | a, b |
| FvSnRK2.8 | gene11969 | chr5 | 12290219..12292886− | 1050 | 349 | 39.43 | 6.76 | 41.81 (unstable) | 81.20 | −0.342 | no | 0 | a, b |
| FvSnRK2.9 | gene24096 | chr1 | 11643335..11647273+ | 1215 | 404 | 45.72 | 4.82 | 44.09 (unstable) | 90.20 | −0.170 | no | 0 | a, b |
| FvSnRK3.1 | gene28136 | chr3 | 21779588..21780994− | 1407 | 468 | 53.65 | 8.77 | 40.89 (unstable) | 88.12 | −0.491 | no | 0 | c, d |
| FvSnRK3.2 | gene13841 | chr6 | 7167764..7169179+ | 1416 | 471 | 53.28 | 9.00 | 32.77 (stable) | 89.36 | −0.414 | no | 0 | c, d |
| FvSnRK3.3 | gene29682 | chr3 | 7803967..7805490− | 1524 | 507 | 56.29 | 7.64 | 39.44 (stable) | 88.22 | −0.219 | no | 0 | c, d |
| FvSnRK3.4 | gene15372 | chr2 | 32504181..32509548+ | 1416 | 471 | 53.98 | 6.03 | 32.57 (stable) | 88.58 | −0.334 | no | 0 | a, b |
| FvSnRK3.5 | gene18646 | chr7 | 3032869..3036362− | 1347 | 448 | 51.53 | 9.13 | 40.50 (unstable) | 77.46 | −0.539 | no | 0 | a, b |
| FvSnRK3.6 | gene30382 | chr3 | 2915121..2920078+ | 1341 | 446 | 49.55 | 8.83 | 30.14 (stable) | 83.30 | −0.314 | no | 0 | a, b |
| FvSnRK3.7 | gene10067 | chr1 | 842428..843711− | 1284 | 427 | 47.96 | 9.34 | 28.34 (stable) | 83.58 | −0.326 | no | 0 | c, d |
| FvSnRK3.8 | gene29681 | chr3 | 7799332..7800717+ | 1386 | 461 | 51.94 | 9.11 | 31.99 (stable) | 78.87 | −0.429 | no | 0 | c, d |
| FvSnRK3.9 | gene13849 | chr6 | 7132323..7133642− | 1320 | 439 | 49.58 | 7.58 | 31.35 (stable) | 91.69 | −0.266 | no | 0 | a, b, d |
| FvSnRK3.10 | gene31049 | chr1 | 3172739..3177629− | 1524 | 507 | 57.42 | 9.24 | 43.34 (unstable) | 86.37 | −0.286 | no | 0 | a, b, d |
| FvSnRK3.11 | gene15015 | chr2 | 35278943..35280274− | 1332 | 443 | 49.74 | 8.94 | 38.64 (stable) | 77.24 | −0.346 | no | 1 | c, d |
| FvSnRK3.12 | gene22806 | chr4 | 15674061..15678224+ | 1425 | 474 | 53.06 | 8.06 | 44.47 (unstable) | 93.54 | −0.368 | no | 0 | a, b |
| FvSnRK3.13 | gene29066 | chr4 | 6439716..6441032+ | 1317 | 438 | 47.51 | 8.87 | 35.28 (stable) | 94.86 | −0.080 | no | 0 | a, b |
| FvSnRK3.14 | gene28132 | chr3 | 21757318..21758637+ | 1320 | 439 | 49.48 | 8.52 | 38.61 (stable) | 87.40 | −0.298 | no | 0 | a, b, d |
| FvSnRK3.15 | gene26443 | chr1 | 4822218..4828540− | 1485 | 494 | 55.46 | 5.67 | 37.29 (stable) | 93.30 | −0.074 | no | 0 | a, b, d |
| FvSnRK3.16 | gene21319 | chr7 | 19497585..19498877+ | 1293 | 430 | 48.84 | 8.99 | 30.50 (stable) | 87.09 | −0.328 | no | 0 | c, d |
Note: a, cytoplasm; b, nucleus; c, endoplasmic reticulum; d, membrane.