Table 1.
Summary of the 10X scRNA and scVDJ Sequencing of Antigen-Binding B Cells
| Enrichment Antigen | PBMC Status | VJ Paired Cells | Naive B Cells | Memory B Cells | Exhausted B Cells | Non-B Cells | IgG1 Clonotypes | |
|---|---|---|---|---|---|---|---|---|
| Batch 1 | S protein | fresh | 14,895 | 5,417 | 6,333 | 1,680 | 1,465 | 2,598 |
| Batch 2 | S protein | frozen | 6,962 | 1,051 | 1,161 | 362 | 4,388 | 883 |
| Batch 3 | RBD protein | fresh | 6,000 | 1,668 | 2,603 | 498 | 1,231 | 812 |
| Batch 4 | S1 (RBD-) | fresh | 11,536 | 3,202 | 6,413 | 1,710 | 211 | 3,093 |
| Batch 5 | RBD protein | fresh | 8,020 | 3,532 | 3,302 | 823 | 363 | 916 |
| Batch 6 | RBD protein | fresh | 2,925 | 1,177 | 1,353 | 260 | 135 | 256 |
| Total | 50,338 | 16,047 | 21,165 | 5,333 | 7,793 | 8,558 |
The experimental details for each sequencing batch. Enrichment antigen refers to the antigen used for the MACS pull-down. Batch 4 was performed on samples that have RBD-binding B cells filtered. PBMC status refers to whether the PBMC used were previously frozen. VJ paired cells refer to cells that both full-length heavy- and light-chain variable regions were detected. Cells are assigned to the same clonotype if they have identical heavy- and light-chain CDR3 DNA sequences. See also Figure S2.