Table 2.

Recombination breakpoints in WMV isolates calculated by different algorithms implemented in RDP.4.0

S. no.	Begin	End	Recombinant sequence (s)	Minor parental sequence (s)	Major parental sequence (s)	Detection methods and their p values
						RDP	GENECONV	Bootscan	Maxchi	Chimaera	SiSscan	3Seq
1	564	1622	KM597070/KM597071	JF273468	Unknown	1.21E−34	3.89E−35	NS	1.38E−13	4.13E−12	1.62E−28	8.95E−08
2	96	864	KM597070/KM597071	Unknown	EU660581	3.83E−31	1.29E−34	NS	2.93E−05	1.13E−09	2.46E−21	1.06E−11
3	5663	6918	KM597070	JF273464	KT992074	1.27E−15	2.15E−15	NS	5.50E−11	9.85E−09	1.12E−16	3.73E−03
4	5549	6198	KM597071	EU660581	Unknown	4.75E−10	4.64E−14	9.81E−11	1.53E−08	1.28E−08	7.02E−12	2.98E−09
5	8331	8918	KM597070	JF273462	Unknown	6.79E−05	6.34E−07	7.75E−04	3.21E−05	1.97E−04	4.75E−08	NS
6	4825	5075	KM597070/KM597071	EU660580	KT992086	2.13E−04	6.54E−03	3.24E−02	NS	8.84E−03	1.48E−04	1.51E−02
7	3146	3958	KM597070 KM597071	EU660580	KU240099	2.00E−07	9.95E−05	2.66E−07	5.97E−04	1.14E−04	9.98E−07	3.22E−04
8	2600	3088	KM597070 KM597071	EU660580	DQ399708	1.57E−07	7.80E−06	2.67E−05	2.21E−04	2.92E−05	1.85E−08	7.37E−03