Table 3.
Genome Regions | Length (nt) | Nucleotide Sequence (nt) | Protein Size (aa) | Motifs and Domains (Consensus Sequences) | Nucleotide Position | Amino Acid Position | |
---|---|---|---|---|---|---|---|
Large intergenic region | 69 | 2162–2196, 1–36 |
Nonanucleotide at the putative stem-loop | 1–9 | |||
WATAWWHAN | |||||||
Replicase (Rep) | Catalytic domain | 668 | 2162–1494 | 223 | Motif I [uuTYxQ] | 2073–2090 | 25–30 |
Motif II [xHxHx] | 1965–1979 | 62–66 | |||||
Motif III [YAxK] | 1842–1853 | 104–107 | |||||
GRS domain [(x)2FD(x)4HPN(x)5] | 1875–1925 | 80–95 | |||||
Central domain | 375 | 1381–1006 | 125 | Walker A [G(x)4GKT] | 1325–1348 | 7–14 | |
Walker B [xFDDx] | 1220–1234 | 45–49 | |||||
Walker C [W/Y(x)2N] | 1091–1102 | 89–92 | |||||
Capsid (Cap/CP) | 974 | 36–1010 | 324 |