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. 2020 Apr 14;12(4):443. doi: 10.3390/v12040443

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Bayesian phylogenetic trees based on complete genome (a) and reverse transcriptase and ribonuclease H (b) nucleotide sequences of badnaviruses infecting cacao. Posterior probability (left) and bootstrap (right) support values are shown above the main tree nodes. Posterior probabilities are also represented by filled (0.95–1.00) and empty (0.50–0.94) circles. Sequences reported in this study are highlighted in red. Cacao bacilliform Sri Lanka virus (CBSLV), Cacao mild mosaic virus (CaMMV), Cacao yellow vein banding virus (CYVBV), Cacao swollen shoot CD virus (CSSCDV), Cacao swollen shoot CE virus (CSSCEV), Cacao swollen shoot Ghana M virus (CSSGMV), Cacao swollen shoot Ghana N virus (CSSGNV), Cacao swollen shoot Ghana Q virus (CSSGQV), Cacao swollen shoot Togo A virus (CSSTAV), and Cacao swollen shoot Togo B virus (CSSTBV). Grapevine vein-clearing virus (GVCV) was used as an outgroup.

Bayesian phylogenetic trees based on complete genome (a) and reverse transcriptase and ribonuclease H (b) nucleotide sequences of badnaviruses infecting cacao. Posterior probability (left) and bootstrap (right) support values are shown above the main tree nodes. Posterior probabilities are also represented by filled (0.95–1.00) and empty (0.50–0.94) circles. Sequences reported in this study are highlighted in red. Cacao bacilliform Sri Lanka virus (CBSLV), Cacao mild mosaic virus (CaMMV), Cacao yellow vein banding virus (CYVBV), Cacao swollen shoot CD virus (CSSCDV), Cacao swollen shoot CE virus (CSSCEV), Cacao swollen shoot Ghana M virus (CSSGMV), Cacao swollen shoot Ghana N virus (CSSGNV), Cacao swollen shoot Ghana Q virus (CSSGQV), Cacao swollen shoot Togo A virus (CSSTAV), and Cacao swollen shoot Togo B virus (CSSTBV). Grapevine vein-clearing virus (GVCV) was used as an outgroup.