Table 2.
RSCU values for each codon, calculated for the APOIV and AEFV coding sequences. Highlighted in bold are the values mentioned in the text. No values have been calculated for stop codons (UAA, UAG, UGA), since only one coding sequence was used for each virus.
| APOIV | AEFV | APOIV | AEFV | APOIV | AEFV | APOIV | AEFV | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| UUU | 1.11 | 1.08 | UCU | 1.01 | 0.75 | UAU | 0.98 | 1.00 | UGU | 0.95 | 1.04 |
| UUC | 0.89 | 0.92 | UCC | 0.73 | 1.13 | UAC | 1.02 | 1.00 | UGC | 1.05 | 0.96 |
| UUA | 0.38 | 0.56 | UCA | 1.57 | 0.96 | UAA | STOP | STOP | UGA | STOP | STOP |
| UUG | 1.39 | 1.23 | UCG | 0.34 | 1.06 | UAG | STOP | STOP | UGG | 1.00 | 1.00 |
| CUU | 1.08 | 0.83 | CCU | 1.19 | 0.89 | CAU | 1.25 | 1.05 | CGU | 0.48 | 1.19 |
| CUC | 1.00 | 1.42 | CCC | 0.86 | 1.00 | CAC | 0.75 | 0.95 | CGC | 0.39 | 1.19 |
| CUA | 0.67 | 0.79 | CCA | 1.69 | 1.32 | CAA | 0.91 | 1.23 | CGA | 0.68 | 1.05 |
| CUG | 1.48 | 1.17 | CCG | 0.25 | 0.79 | CAG | 1.09 | 0.77 | CGG | 0.68 | 0.88 |
| AUU | 1.10 | 1.22 | ACU | 1.13 | 0.98 | AAU | 0.91 | 0.84 | AGU | 1.04 | 0.96 |
| AUC | 1.15 | 1.05 | ACC | 1.27 | 1.07 | AAC | 1.09 | 1.16 | AGC | 1.32 | 1.13 |
| AUA | 0.75 | 0.73 | ACA | 1.29 | 1.00 | AAA | 1.01 | 1.23 | AGA | 2.19 | 1.00 |
| AUG | 1.00 | 1.00 | ACG | 0.32 | 0.95 | AAG | 0.99 | 0.77 | AGG | 1.58 | 0.69 |
| GUU | 1.08 | 1.29 | GCU | 1.65 | 1.07 | GAU | 0.97 | 0.67 | GGU | 0.73 | 0.74 |
| GUC | 1.00 | 0.98 | GCC | 1.03 | 1.62 | GAC | 1.03 | 1.33 | GGC | 0.73 | 0.73 |
| GUA | 0.29 | 0.62 | GCA | 1.05 | 0.68 | GAA | 1.09 | 1.07 | GGA | 1.75 | 1.57 |
| GUG | 1.63 | 1.11 | GCG | 0.27 | 0.63 | GAG | 0.91 | 0.93 | GGG | 0.80 | 0.96 |