. 2003 Oct 3;553(3):451–456. doi: 10.1016/S0014-5793(03)01091-3

Table 3.

Comparison of the predicted results for TGEV and PEDV with those annotated by NCBI^a

Number	Genome	Location (bp)		Location (aa)		Length (aa)	Cleavable peptide	Feature
		Start	Stop	Start	Stop

1	TGEV	315	638	1	108	108	–	PCP CP1
	NC_002306	639	2 951	109	879	771	KIARTG\|RGAIYV	PCP CP2
		2 952	7 478	880	2 388	1 509	YNKMGG\|GDKTVS	PCP CP3
		7 479	8 948	2 389	2 878	490	VSPKSG\|SGFFDV	PCP CP4
		8 949	9 854	2 879	3 180	302	STLQ\|SGLR	nsp2
		9 855	10 736	3 181	3 474	294	VNLQ\|AGKV	nsp3
		10 737	10 985	3 475	3 557	83	STVQ\|SKLT	nsp4
		10 986	11 570	3 558	3 752	195	TILQ\|SVAS	nsp5
		11 571	11 903	3 753	3 863	111	TKLQ\|NNEI	nsp6
		11 904	12 308	3 864	3 998	135	VRLQ\|AGKP	nsp7
		12 309	15 094	3 999	4 927	929	TSMQ\|SFTV	nsp9^b
		15 095^c	16 891^c	4 928	5 526	599	TVLQ\|AAGM	nsp10
		16 892^c	18 448^c	5 527	6 045	519	IGLQ\|AKPE	nsp11
		18 449^c	19 465^c	6 046	6 384	339	KALQ\|SLEN	nsp12
		19 466^c	20 365^c	6 385	6 684	300	PQLQ\|SAEW	nsp13
2	PEDV	297	626	1	110	110	–	PCP CP1
	NC_003436	627	2 981	111	895	785	FGRRGG\|NIVPVD	PCP CP2
		2 982	7 847	896	2 517	1 622	FKKKGG\|GDVKFS	PCP CP3
		7 848	9 287	2 518	2 997	480	ANKKGA\|GLPSFS	PCP CP4
		9 288	10 193	2 998	3 299	302	STLQ\|AGLR	nsp2
		10 194	11 033	3 300	3 579	280	VNLQ\|GGYV	nsp3
		11 034	11 282	3 580	3 662	83	SSVQ\|SKLT	nsp4
		11 283	11 867	3 663	3 857	195	SMLQ\|SVAS	nsp5
		11 868	12 192	3 858	3 965	108	VKLQ\|NNEI	nsp6
		12 191	12 596	3 966	4 100	135	VRLQ\|AGKQ	nsp7
		12 597	15 376	4 101	5 027	927	SIMQ\|STDM	nsp9^d
		15 377	17 167	5 028	5 624	597	AVLQ\|SAGL	nsp10
		17 168	18 718	5 625	6 141	517	SDLQ\|ANEG	nsp11
		18 719	19 735	6 142	6 480	339	NNLQ\|GLEN	nsp12
		19 736	20 638	6 481	6 781	301	PQLQ\|ASEW	nsp13

Note that of the 24 coronavirus genomes, the predicted results by ZCURVE_CoV 2.0 are in complete agreement with those annotated by NCBI, except for the genomes of TGEV and PEDV, in which the predicted results are different from those annotated by NCBI. In this table the reasons for these conflicts are analyzed.

This conflict with the annotation is caused by the problematic annotation.

The locations are different from the annotation, which is caused by a questionable additional insertion of an amino acid residue in nsp9.

This conflict with the annotation is caused by the non-standard frameshift.