Table 2.
Genetic differentiation among sub-population based on polyprotein and coat protein.
| Group 1 | Group 2 | Fst for Polyprotein | Fst for Coat protein |
|---|---|---|---|
| O-II | Phylogroup B | 0.727 | 0.738 |
| O-II | EA-I | 0.367 | 0.652 |
| O-II | EA-III | 0.699 | 0.607 |
| Phylogroup B | EA-I | 0.708 | 0.595 |
| Phylogroup B | EA-III | 0.745 | 0.496 |
| EA-I | EA-III | 0.638 | 0.245 |
| O-II East African origin (K16 and K31) | O-II (non-East Africa origin) | 0.441 | 0.488 |
| Uganda isolates (strain EA) | Kenya isolates (strain EA) | 0.162 | 0.014 |
| EA-IV | EA-I | 0.532 | 0.409 |
| EA-IV | EA-III | 0.691 | 0.154 |
Bold indicate low genetic differentiation between the sub-population.