Table 3.
Neutrality test based on variation within polyprotein encoding nucleotide sequence.
| n | Tajima's D statistic | Fu & Li's D* statistic | Fu & Li's F* statistic | |
|---|---|---|---|---|
| All isolates | 29 | 0.223, P > 0.10 | 2.389, P < 0.02 | 1.827 P < 0.05 |
| EA-I | 5 | 0.856, P > 0.10 | 1.680, P < 0.02 | 1.666, P < 0.05 |
| EA-III | 6 | 0.229, P > 0.10 | 1.701, P < 0.02 | 1.497, P = 0.10 |
| O-II | 7 | 0.248, P > 0.10 | 1.729, P < 0.02 | 1.518, P = 0.1 |
| Phylogroup B | 6 | −0.161, P > 0.10 | 1.696, P < 0.02 | 1.376, P > 0.10 |
| Uganda isolates (Strain EA) | 10 | 0.488, P > 0.1 | 1.83667, P < 0.02 | 1.666, P < 0.05 |
| Kenya Isolates (Strain EA) | 3 | 1.339, P > 0.10 | 1.770, P < 0.02 | 1.848, P < 0.02 |
| O-II East Africa origin (K16 and K31) | 2 | 2.333, P < 0.01 | 2.41273, P < 0.02 | 1.482, P = 0.1 |
| O-II (non-East Africa origin) | 5 | 0.691, P > 0.10 | 2.41273, P < 0.02 | 1.482, P = 0.10 |
| Phylogroup B excluding P33 | 5 | 0.274, P > 0.10 | 1.667, P < 0.02 | 1.490, P = 0.1 |
Bold indicate significance neutrality tests at p = 0.05, number of isolates (n).