Table 4.
Codon sites predicted under positive selection.
| Gene | IFEL | REL | MEME |
|---|---|---|---|
| P1 |
8, 35, 82, 248, 256, 263, 267, 270, 271, 272, 291, 294, 495, 561, 578, 668, 669 |
No positive selection site | 8, 69, 82, 89, 94, 117, 248, 263, 270, 271, 291, 339, 346, 352, 362, 367, 400, 423, 430, 473, 495, 533, 561, 668, 703 |
| HC-Pro | 353 | No positive selected site | 3 |
| P3 | 131, 215 | 334 | 81, 103, 108, 119, 152, 155, 164, 191, 192, 215, 278, 335 |
| 6K1 | No positive selected sites | No positive selected site | No positive selected sites |
| CI | 57, 120 | No positive selected site | 57, 73, 105, 422 |
| 6K2 | 27 | No positive selected sites | 27 |
| NIa-VPg | No positive selection | 98, 118 | 177 |
| NIa-Pro | No positive selected site | 196 | 196, 198 |
| NIB | 49, 470, 515 | 49 | 336, 368, 400,468, 488 |
| CP | 2, 71 | 2, 4,13, 21, 22, 65 | 22, 259, 276 |
Bold indicate sites predicted by two models to be under positive selection.