Table 5.
Predicted recombinant isolates, recombination breakpoints and parental-like isolate.
| Breakpoint in Recombinant |
Detection Methods |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Begin | End | Recombinant | Minor Parent | Major Parent | RDP | G | B | M | C | S |
| 1013 | 10415 | AB439206 | D86371 | AB465608 | 5.99E-70 | 3.81E-91 | 5.73E-86 | 1.87E-24 | 8.08E-25 | 8.44E-27 |
| 7483 | 10613 | FJ155666 | P35 | AB465608 | 4.43E-74 | NS | 9.28E-85 | 5.73E-36 | 2.48E-38 | 1.01E-37 |
| 6656 | 10471 | K14 | U25 | AB465608 | 7.54E-65 | 1.23E-57 | 1.03E-70 | 5.77E-39 | 6.27E-40 | 6.16E-39 |
| 7596 | 10276 | KP729265.1 | P35 | AB465608 | 3.51E-66 | NS | 1.72E-70 | 1.54E-35 | 1.00E-35 | 7.10E-34 |
| 22 | 3305 | P35 | AB465608 | Unknown (P33) | 1.49E-69 | 1.01E-69 | 2.73E-77 | 1.08E-32 | 4.08E-33 | 1.55E-45 |
| 8410 | 9994 | U10 | P35 | AB465608 | 4.09E-68 | 3.31E-45 | 9.02E-64 | 9.49E-22 | 1.09E-22 | 6.24E-25 |
| 7316 | 10263 | U33 | P35 | AB439206 | 1.81E-51 | NS | 8.05E-61 | 2.78E-35 | 4.80E-36 | 1.58E-35 |
| 1089 | 10476 | U40 | Unknown (U10) | K3 | 6.98E-18 | 8.91E-39 | 6.43E-50 | 4.92E-19 | 1.20E-10 | 4.31E-21 |
| 6825 | 7470 | K3 | AB465608 | U26 | 1.39E-45 | 1.57E-39 | 1.69E-45 | 1.71E-16 | 4.07E-17 | 4.40E-13 |
| 3316 | 10011 | K3 | AB465608 | Unknown (P33) | 3.85E-50 | 2.39E-61 | 3.22E-69 | 1.69E-33 | 8.54E-26 | 7.12E-71 |
| 6788 | 7312 | U25 | MF572056 | P35 | 1.50E-30 | 5.54E-12 | 4.26E-29 | 5.53E-12 | 8.77E-12 | 2.23E-08 |
| 842 | 10509 | U32 | Unknown (MF572055.1) | U44 | 4.72E-27 | 4.54E-17 | 4.69E-24 | 1.06E-16 | 1.21E-12 | 4.03E-12 |
| 9195 | 9523 | MF572056 | KF386014 | KF386013 | 1.81E-25 | 4.41E-22 | NS | 4.72E-08 | 1.72E-08 | 1.08E-07 |
| 3384 | 3474 | U33 | U23 | K16 | 5.09E-07 | 2.76E-05 | 1.83E-07 | 2.87E-02 | NS | 5.08E-53 |
| 1014 | 1255 | MF572056 | MF572047 | K31 | 1.31E-08 | NS | 2.04E-07 | 1.84E-02 | 4.81E-03 | 1.15E-03 |
| 843 | 1279 | FJ155666 | Unknown (K16) | U32 | 2.86E-06 | 6.05E-05 | 8.51E-07 | 4.67E-06 | 1.21E-04 | 4.07E-14 |
| 6592 | 8409 | U40 | U7 | K31 | 8.53E-03 | 6.01E-07 | 6.07E-06 | 4.23E-04 | 1.26E-05 | 4.98E-12 |
| 6638 | 10421 | KP115608 | P35 | KF386013 | 3.30E-06 | NS | 4.38E-07 | 3.15E-22 | 4.10E-21 | 2.53E-49 |
Non-significant (NS), GENECONV (G), BootScan (B), MaxChi (M), Chimaera (C), SiScan (S).