Table 3. GO classification of the up-regulated genes in G123.

GO Term	Description	Count	%	p-value	FDR
Biological process
GO:0006810	transport	14	23.0	7.31E-02	4.06E-03
GO:0015979	photosynthesis	11	18.0	2.08E-08	1.04E-08
GO:0009765	photosynthesis, light harvesting	7	11.5	3.52E-10	3.52E-10
GO:0009637	response to blue light	5	8.2	3.80E-04	4.22E-05
GO:0006091	generation of precursor metabolites and energy	5	8.2	2.87E-01	1.10E-02
GO:0010218	response to far red light	4	6.6	1.11E-02	8.56E-04
GO:0010114	response to red light	4	6.6	1.31E-02	9.37E-04
GO:0019344	cysteine biosynthetic process	4	6.6	3.50E-02	2.18E-03
GO:0009228	thiamine biosynthetic process	3	4.9	2.52E-02	1.68E-03
GO:0010154	fruit development	3	4.9	9.58E-02	4.56E-03
GO:0010155	regulation of proton transport	3	4.9	1.52E-01	6.90E-03
Cellular Component
GO:0016020	membrane	23	37.7	7.82E-02	4.12E-03
GO:0009536	plastid	23	37.7	8.33E-02	4.17E-03
GO:0009507	chloroplast	15	24.6	2.81E-04	3.51E-05
GO:0005622	intracellular	11	18.0	2.12E-01	8.48E-03
GO:0009579	thylakoid	9	14.8	1.34E-03	1.34E-04
GO:0009535	chloroplast thylakoid membrane	8	13.1	1.17E-04	1.67E-05
GO:0009941	chloroplast envelope	8	13.1	2.02E-03	1.84E-04
GO:0010287	plastoglobule	6	9.8	1.10E-05	1.83E-06
GO:0009570	chloroplast stroma	6	9.8	1.75E-01	7.62E-03
GO:0030076	light-harvesting complex	5	8.2	1.21E-06	3.03E-07
GO:0009534	chloroplast thylakoid	5	8.2	5.15E-03	4.30E-04
Molecular Function
GO:0046872	metal ion binding	19	31.1	8.46E-06	1.69E-06
GO:0005488	binding	19	31.1	5.15E-02	3.03E-03
GO:0005215	transporter activity	10	16.4	2.09E-01	8.48E-03
GO:0016168	chlorophyll binding	6	9.8	6.49E-08	2.16E-08

Thresholds: p-value < 0.5; FDR < 0.1