| HE | hepatic encephalopathy |
| EA | endotoxin activity |
| sCD163 | soluble CD163 |
| sMR | mannose receptor |
| rRNA | ribosomal RNA |
| mHE | minimal hepatic encephalopathy |
| TJPs | tight junction proteins |
| SIBO | small-intestinal bacterial overgrowth |
| LPS | lipopolysaccharide |
| LMR | lactulose/mannitol ratio |
| NCT | number connection test |
| EAA | endotoxin activity assay |
| TNF-α | tumor necrosis factor-alpha |
| IL-6 | interleukin-6 |
| IFN-γ | interferon-gamma |
| IL-10 | interleukin-10 |
| ELISA | enzyme-linked immunosorbent assay |
| OTUs | operational taxonomic units |
| SD | standard deviation |
| MELD | median model of end-stage liver disease |
| CRP | C-reactive protein |
| WBC | white blood cells |
| BTR | branched chain amino acid and tyrosine ratio |
| PAMPs | pathogen-associated molecular patterns |
| TLR4 | toll-like receptor 4 |
| PXR | pregnane X receptor |
| HBV | hepatitis B virus |
| HCV | hepatitis C virus |
| NASH | non-alcoholic steatohepatitis; |
| AIH | autoimmune hepatitis |
| PBC | primary biliary cholangitis |