Table 1.
Samples used for the present phylogenetic studies. Newly sequenced collections are in bold.
| Taxon | Voucher | Country | GenBank acc. numbers | |||
|---|---|---|---|---|---|---|
| ITS | 28S | 18S | rpb2 | |||
| Agaricaceae sp. | RC_Mart06_016 | Martinique | HQ839742 | HQ839743 | HQ839744 | HQ839745 |
| Agaricus aff. campestris | PBM 2580 | Massachusetts, USA | DQ486682 | DQ110871 | DQ113914 | ── |
| Agaricus bisporus | AFTOL-ID 448/strain OMF | Denmark/USA | DQ404388 | AY635775 | AY787216 | AF107785 |
| Agaricus sylvaticus | JFM-AS | Taiwan | ── | AJ244523 | AJ012405 | ── |
| Agrocybe pediades | AFTOL-ID 1493 | California, USA | DQ484057 | DQ110872 | DQ113915 | ── |
| Agrocybe praecox | AFTOL-ID 728 | Washington, USA | AY818348 | AY646101 | AY705956 | DQ385876 |
| Agrocybe rivulosa | strain CCB160 | Tennessee, USA | KF830098 | KF830090 | KF830078 | KF830069 |
| Agrocybe smithii | AFTOL-ID 1494 | Washington, USA | DQ484058 | DQ110873 | DQ115779 | ── |
| Bogbodia uda (“Nematoloma longisporum”) | AFTOL-ID 1893 | Massachusetts, USA | DQ490634 | DQ457681 | DQ444863 | ── |
| Bolbitius viscosus | PBM 3032 | Tennessee, USA | HQ840656 | HQ840657 | KJ137269 | HQ840658 |
| Bolbitius vitellinus | AFTOL-ID 1730 | Washington, USA | DQ200920 | AY691807 | AY705955 | DQ385878 |
| Chlorophyllum agaricoides | AFTOL-ID 440 | Greece | DQ200928 | AY700187 | AY657010 | ── |
| Conocybe lactea | PBM 2706 | Massachusetts, USA | DQ486693 | DQ457660 | DQ437683 | DQ470834 |
| Conocybe smithii | CCB 185 | Oregon, USA | KF830097 | KF830088 | ── | KF830068 |
| Coprinellus disseminatus | SFSU MRK18/strain 24.3/strain C345.1 | Various | AY461838 | AF056456 | ── | DQ056143 |
| Coprinopsis atramentaria | PBM 992 | Washington, USA | DQ486694 | DQ457661 | DQ115781 | ── |
| Coprinopsis cinerea | KACC49356/C13/okayama 7#130 | Various | AF345819 | AF041494 | M92991 | XM_001829088 |
| Coprinus comatus | AFTOL-ID 626 | California, USA | AY854066 | AY635772 | AY665772 | AY780934 |
| Cortinarius aurilicis | TSJ1998-101 | France | DQ083772 | AY684152 | AY705957 | DQ083880 |
| Cortinarius bolaris | IB19990199 /strain REG MB 96-086/ | Germany | AF389169 | AY293173 | AY293125 | ── |
| Cortinarius iodes | IB19850061/AFTOL-ID 285 | Massachusetts, USA | AF389133 | AY702013 | AY771605 | AY536285 |
| Cortinarius sodagnitus | TF2001-094/AFTOL-ID 811 | Denmark | DQ083812 | AY684151 | AY752975 | DQ083920 |
| Cortinarius violaceus | MTS 4854/AFTOL-ID 814 | Washington, USA | DQ486695 | DQ457662 | AY705950 | DQ470835 |
| Crassisporium funariophylum (“Pachylepyrium carbonicola”) | TENN 028784/AHS44809 | Idaho, USA | HQ222013 | HQ832460 | HQ832427 | ── |
| TENN 028785/AHS65056 | Idaho, USA | HQ222014 | HQ222015 | HQ832428 | ── | |
| PBM 2293/PBM1411 | Washington, USA | ── | DQ986294 | ── | HQ832438 | |
| strain Moser 49/22 | Austria | KF830095 | KF830085 | ── | ── | |
| strain Moser 49/8 | Austria | KF830096 | KF830086 | ── | ── | |
| Crepidotus cf. applanatus | PBM717 (WTU) | Washington, USA | DQ202273 | AY380406 | AY705951 | AY333311 |
| Crepidotus sp. | PBM3463 | Western Australia, AU | HQ728537 | HQ728538 | HQ728539 | HQ728540 |
| Crepidotus variabilis | REG JE 5.3 | Unknown | ── | AY293174 | AY293126 | ── |
| Crucibulum laeve | REG Crul1/DSH 96-02 | Unknown | DQ486696 | AF336246 | AF026624 | DQ470836 |
| Cyathus striatus | DSH 96-028/Cyst1/DSH 96-001 | Unknown | DQ486697 | AF336247 | AF026617 | DQ472711 |
| Cystoderma amianthinum | TENN063549/AFTOL-ID 1553 | Wales, UK | GU296098 | DQ154108 | GU296097 | ── |
| Descolea maculata | AFTOL-ID 1521 | Western Australia, AU | DQ192181 | DQ457664 | DQ440633 | ── |
| Descolea phlebophora | TENN 063626/PBM 3108 | New Zealand | HQ728543 | HQ728544 | KJ137258 | HQ728545 |
| Descolea recedens | TENN 063870/PBM 3211 | Tasmania, AU | HQ728546 | HQ827174 | ── | HQ827175 |
| Descolea tenuipes | TENN 063871/PBM 3212 | Tasmania, AU | HQ832453 | HQ832466 | HQ832432 | HQ832443 |
| Flammula alnicola | PBM 2608/AFTOL-ID 1501 | Tennessee, USA | DQ486703 | DQ457666 | DQ113916 | DQ472714 |
| Flammulaster sp. | PBM 1871 | Washington, USA | ── | AY380408 | ── | AY333315 |
| PBM 3449 | Tasmania, AU | HQ827176 | HQ827177 | HQ827178 | ── | |
| Galerina atkinsoniana | PBM 2719/AFTOL-ID 1760 | Colorado, USA | DQ486705 | DQ457668 | DQ440634 | ── |
| Galerina clavus | Contu_15122007 | Italy | ── | HQ832461 | HQ832429 | ── |
| Galerina marginata | AFTOL-ID 465 | Massachusetts, USA | DQ192182 | DQ457669 | DQ440635 | ── |
| Galerina semilanceata | PBM 1398/AFTOL-ID 1497 | Washington, USA | DQ486706 | AY038309 | DQ440639 | AY337357 |
| Galerina sp. | PR 6574 | USA, Puerto Rico | HQ827182 | HQ827183 | HQ827184 | HQ839737 |
| Hebeloma affine | NI 270904 | Ontario, Canada | FJ436320 | EF561632 | HQ832422 | FJ436321 |
| Hebeloma angustilamellatum (“Anamika angustilamellata”) | AFTOL-ID 543 | China | AY575919 | AY575919 | DQ092918 | ── |
| Hebeloma olympianum | BK 21-Nov-98-20 | Washington, USA | ── | AY038310 | ── | AY337359 |
| Hebeloma velutipes | AFTOL-ID 980 PBM2277 | California, USA | AY818351 | AY745703 | AY752972 | DQ472718 |
| Hydnangium carneum | TENN 063868/PBM 3209 | Tasmania, AU | HQ832445 | HQ832455 | HQ832423 | HQ832433 |
| Hymenagaricus taiwanensis | AFTOL-ID 1383 | Taiwan | DQ490633 | DQ457680 | DQ089016 | ── |
| Hypholoma australianum (“Hypholoma australe”) | PBM 3481 | Western Australia, AU | HQ832446 | HQ832456 | KJ137259 | HQ832434 |
| Hypholoma fasciculare | PBM 1844 | Washington, USA | ── | AY380409 | ── | AY337413 |
| Hypholoma sublateritium | AFTOL-ID 597 | Massachusetts, USA | AY818349 | AY635774 | AY787215 | ── |
| Hypholoma subviride | TENN 062712/TJB10226 | Tennessee, USA/Belize | HQ222020 | HQ832457 | HQ832424 | HQ832435 |
| Inocybe aff. asterospora | PBM 2014/PBM 2453 | New York, USA | DQ404390 | AY702015 | AY654889 | ── |
| Inocybe mutata | PBM 2953/PBM 2542/AFTOL-ID 1632 | Tennesse/Massachusetts, USA | JQ801410 | AY732212 | DQ457623 | DQ472729 |
| Inocybe myriadophylla | AFTOL-ID 482 | Finland | DQ221106 | AY700196 | AY657016 | AY803751 |
| Inocybe pallidicremea | PBM2448 /PBM2039 | Washington, USA | HQ201357 | AY380385 | ── | AY337388 |
| Inocybe rimosoides | AFTOL-ID 520 | New York, USA | DQ404391 | AY702014 | AY752967 | DQ385884 |
| Inocybe unicolor | PBM 2589/PBM1841/DUKE RV7/4 | Tennessee/Missouri, USA | EU523554 | AY380403 | AF287836 | AY337409 |
| Laccaria amethystina | DSH s.n. | Unknown | ── | AF393062 | AF287837 | ── |
| Laccaria bicolor | TWO 752 (MONT)/Cham3/S238N-H82 | Montana, USA/France | DQ149869 | AF042588 | ── | XM_001873347 |
| Laccaria ochropurpurea | AFTOL-ID 1477 | France/New York, USA | AF006598 | AY700200 | AY654886 | DQ472731 |
| Laccaria pumila | DSH s.n. | Unknown | ── | AF287869 | AF287838 | ── |
| Lacrymaria velutina | AFTOL-ID 478 | Massachusetts, USA | DQ490639 | AY700198 | AY654885 | DQ472733 |
| Langermannia gigantea | DSH96-032 | Unknown | ── | AF518603 | AF026622 | ── |
| Lepiota cristata | ECV2449/AFTOL-ID 1625 | Michigan, USA | AF391041 | DQ457685 | DQ457627 | ── |
| Lepiota maculans | JMB 080509_18 | Tennessee, USA | HM222939 | HQ832458 | HQ832425 | HQ832436 |
| Leucoagaricus barssii | AFTOL-ID 1899 | California, USA | DQ911600 | DQ911601 | GU187658 | DQ911602 |
| Lycoperdon pyriforme | AFTOL-ID 480/DSH96-054 | Unknown | AY854075 | AF287873 | AF026619 | AY218495 |
| Macrolepiota dolichaula | AFTOL-ID 481/AFTOL-ID 529 | China | DQ221111 | DQ411537 | AY771602 | DQ385886 |
| Macrolepiota procera | 18-X-1990, R.P.J. de Kok/DSH 96-038 | Netherlands | AY243589 | AF518628 | ── | ── |
| Mycocalia denudata | AFTOL-ID 2018/CBS 494.85 | Canada | DQ911596 | DQ911597 | DQ911598 | KJ137274 |
| Mythicomyces corneipes | AFTOL-ID 972 | Washington, USA | DQ404393 | AY745707 | DQ092917 | DQ408110 |
| DAOM 178138 | Canada | ── | AF261381 | ── | ── | |
| strain KB51 | Pakistan | KY648897 | ── | ── | ── | |
| ES11.10.2.A | Germany | KC964108 | ── | ── | ── | |
| Naucoria escharioides | PAM03/99/PBM 1719 | France/Washington, USA | AY900086 | AY380405 | ── | AY337411 |
| Nidula niveotomentosa | AFTOL-ID 1945/CBS250.84 | Canada | DQ917654 | DQ986295 | GU296099 | KJ137275 |
| Phaeocollybia festiva | AFTOL-ID 1489/PBM 2366 | Norway | DQ494682 | AY509119 | DQ462516 | AY509118 |
| Phaeomarasmius fulvidulus | Okada 170163 | Argentina | KF830092 | KF830087 | ── | ── |
| T 1495 | Argentina | KF830091 | KF830080 | KF830072 | KF830063 | |
| Phaeomarasmius proximans | AFTOL-ID 979/PBM1936 (WTU) | Vermont, USA | DQ404381 | AY380410 | AY752970 | AY333314 |
| Phaeomyces dubiosus strain | PAM06110301 | France | KF830099 | KF830089 | KF830077 | KF830070 |
| Pholiota aff. astragalina | PBM 2975 | Tennessee, USA | HQ832448 | HQ832462 | KJ137263/KJ137264 | HQ832439 |
| Pholiota multicingulata | TENN 063875 | New Zealand | HQ832449 | HQ832463 | HQ832430 | HQ832440 |
| Pholiota nubigena(“Nivatogastrium nubigenum”) | AFTOL-ID 1500 | California, USA | DQ494679 | DQ470815 | DQ459373 | ── |
| Pholiota squarrosa | AFTOL-ID 1627 | Colorado, USA | DQ494683 | DQ470818 | DQ465337 | ── |
| Pholiotina filaris | AFTOL-ID 1498 | Massachusetts, USA | DQ494684 | DQ470819 | DQ465338 | ── |
| Pleuroflammula flammea | AFTOL-ID 1381/MCA 339 | Unknown | DQ494685 | AF367962 | DQ089021 | DQ474124 |
| Pleuroflammula praestans | PBM3461 | Western Australia, AU | HQ832450 | HQ832464 | HQ832431 | HQ832441 |
| Pleuroflammula tuberculosa | PAM 02072903 | France | HQ832452 | HQ832465 | KJ137265 | HQ832442 |
| Psathyloma catervatim | PBM 3420 | Tasmania, AU | HQ840663 | HQ840664 | HQ840665 | HQ840666 |
| Psathyloma leucocarpum | PBM 3116 | New Zealand | HQ840659 | HQ840660 | HQ840661 | HQ840662 |
| Psathyrella candolleana | AFTOL-ID 1507 | Massachusetts, USA | DQ494689 | DQ110874 | DQ465339 | ── |
| Psathyrella gracilis | J 130 | Unknown | ── | AF041533 | DQ851582 | ── |
| Psathyrella rhodospora | AFTOL-ID 723 MP133 (MIN) | Minnesota, USA | DQ267129 | AY645058 | DQ089018 | ── |
| Psathyrella spadicea | AFTOL-ID 1628 | Colorado, USA | DQ494690 | DQ470822 | DQ465340 | ── |
| Psilocybe caerulipes | T SAT09-216-06 | Tennessee, USA | KC669282 | KF830084 | KF830075 | KF830067 |
| Psilocybe cubensis | strain DNA2052 | Unknown | KF830094 | KF830083 | KF830074 | KF830066 |
| Psilocybe cyanescens | PSMICSY-200 | Unknown | KJ137276 | KJ137277 | KJ137266 | KJ137278 |
| Psilocybe sp. (“Pachylepyrium funariophilum”) | strain TENN 6030 | Washington, USA | ── | AF261513 | ── | ── |
| Psilocybe stuntzii | VT1263 | Unknown | ── | AF042567 | DQ851584 | ── |
| Psilocybe subaeruginosa | PBM 3218 TENN065481 | Tasmania, AU | KC669278 | KF830079 | KF830071 | KF830062 |
| Romagnesiella clavus | AMB 15091 | Italy | ── | MK353795 | MK353799 | MK359092 |
| Romagnesiella clavus (“Tubaria minima”) | PAM 06090110 | France | EF051060 | EF051055 | ── | ── |
| Simocybe serrulata | AFTOL-ID 970 | Massachusetts, USA | DQ494696 | AY745706 | DQ465343 | DQ484053 |
| Simocybe sp. | PBM 3031 | Tennessee, USA | GQ893023 | GQ892979 | KJ137267 | HQ832444 |
| Squamanita paradoxa | TENN 063549/GG_BM05B | Wales, UK | GU296096 | EF535266 | GU296095 | ── |
| Stagnicola perplexa | DAOM 191293 | British Columbia, Canada | ── | AF261509 | ── | ── |
| Stagnicola perplexa | Broussal 20160928_909MB | France | MK351604 | MK353788 | MK353797 | MK359087 |
| DAOM 191292 | British Columbia, Canada | MK351605 | MK353789 | ── | MK359088 | |
| DAOM 191296 | Newfoundland Labrador, Canada | MK351606 | MK353790 | ── | MK359089 | |
| DAOM 191295 | British Columbia, Canada | MK351607 | MK353791 | ── | ── | |
| SFSU F-032462 | California, USA | MK351608 | MK353792 | MK353798 | MK359090 | |
| Stagnicola perplexa (“Simocybe parvispora”) | AH 25260 holotype | Spain | MK351609 | MK353793 | ── | MK359091 |
| AH 25282 paratype | Spain | MK351610 | MK353794 | ── | ── | |
| KS-BR126 | Sweden | MK045203 | ── | ── | ── | |
| Stropharia ambigua | AFTOL-ID 726 | Washington, USA | AY818350 | AY646102 | DQ092924 | DQ484054 |
| Stropharia rugosoannulata | Hopple D258 | Unknown | DQ494697 | AF518654 | AF026635 | ── |
| Tricholoma myomyces | KMS 589 | Unknown | DQ825428 | U76459 | DQ367422 | DQ367436 |
| Tricholoma palustre | AFTOL-ID 1497 | Massachusetts, USA | DQ494699 | AY700197 | AY757267 | DQ484055 |
| Tubaria confragosa | AFTOL-ID 498 | Washington, USA | DQ267126 | AY700190 | AY665776 | DQ408113 |
| Tubaria furfuracea | MCA 391 | California, USA | ── | AF205710 | DQ851587 | ── |
| Tubaria serrulata | AFTOL-ID 1528 | Western Australia, AU | DQ182507 | DQ156128 | DQ462517 | ── |
| Tubaria sp. | PBM 3355 | Tasmania, AU | HQ839739 | HQ839740 | HQ839741 | ── |
| BM378_17 | Washington, USA | HQ832454 | HQ832467 | KJ137268 | HQ839738 | |
| Tubaria vinicolor | AFTOL-ID 499 | Washington, USA | DQ536417 | DQ536415 | DQ536416 | DQ536418 |
| Tulostoma macrocephala | strain Long 10111 | Unknown | ── | AF518663 | AF026625 | ── |
| Verrucospora flavofusca | AFTOL-ID 655 | China | DQ241779 | DQ470825 | AY665783 | ── |