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. 2020 Apr 23;16(4):e1007617. doi: 10.1371/journal.pcbi.1007617

Table 7. Classification results of DDI classification.

SOTA: state-of-the-art. P: Precision. R: Recall. The SOTA results are extracted from [63]. Direct comparison: the results of embeddings using the same method (cbow) and same hyperparameters. Different embedding methods: the results of BioConceptVec (skip-gram), BioConceptVec (GloVe) and BioConceptVec (fastText). The highest results of each section are marked as bold.

Model F1-score on each relation type Overall performance
Int Advice Effect Mechanism P R F
Zhang et al. (SOTA) 0.5400 0.8000 0.7200 0.7400 0.7400 0.7200 0.7300
SEN 0.3569 0.8336 0.7978 0.8463 0.7940 0.7832 0.7776
Direct comparison
SEN + BioAvgWord (cbow) 0.3150 0.7787 0.8000 0.8824 0.7883 0.7814 0.7731
SEN     + Yu et al. (cbow) 0.4285 0.8263 0.8133 0.8559 0.7948 0.7961 0.7916
SEN     + BioConceptVec (cbow) 0.5206 0.8423 0.8191 0.8692 0.8167 0.8161 0.8105
Different embedding methods
SEN    + BioConcept (skip-gram) 0.4090 0.8164 0.8255 0.8626 0.8088 0.8025 0.7941
SEN    + BioConcept (GloVe) 0.4587 0.8100 0.8160 0.8702 0.8046 0.8029 0.7963
SEN    + BioConcept (fastText) 0.4382 0.8153 0.8200 0.8571 0.7999 0.7998 0.7930