Table 2. Table of study sets currently included in the SpikeForest analysis.
Study sets fall into three categories: paired, synthetic, and curated. Each study set comprises one or more studies, which in turn comprise multiple recordings acquired or generated under the same conditions.
Study set | # Rec. / # Elec. / Dur. | Source lab. | Description |
---|---|---|---|
Paired intra/extracellular | |||
PAIRED_BOYDEN | 19 / 32ch / 6-10min | E. Boyden | Subselected from 64, 128, or 256-ch. probes, mouse cortex |
PAIRED_CRCNS_HC1 | 93 / 4-6ch / 6-12min | G. Buzsaki | Tetrodes or silicon probe (one shank) in rat hippocampus |
PAIRED_ENGLISH | 29 / 4-32ch / 1-36min | D. English | Hybrid juxtacellular-Si probe, behaving mouse, various regions |
PAIRED_KAMPFF | 15 / 32ch / 9-20min | A. Kampff | Subselected from 374, 127, or 32-ch. probes, mouse cortex |
PAIRED_MEA64C_YGER | 18 / 64ch / 5min | O. Marre | Subselected from 252-ch. MEA, mouse retina |
PAIRED_MONOTRODE | 100 / 1ch / 5-20min | Boyden, Kampff, Marre, Buzsaki | Subselected from paired recordings from four labs |
Simulation | |||
SYNTH_BIONET | 36 / 60ch / 15min | AIBS | BioNet simulation containing no drift, monotonic drift, and random jumps; used by JRCLUST, IronClust |
SYNTH_JANELIA | 60 / 4-64ch / 5-20min | M. Pachitariu | Distributed with KiloSort2, with and without simulated drift |
SYNTH_MAGLAND | 80 / 8ch / 10min | Flatiron Inst. | Synthetic waveforms, Gaussian noise, varying SNR, channel count and unit count |
SYNTH_MEAREC_NEURONEX | 60 / 32ch / 10min | A. Buccino | Simulated using MEAREC, varying SNR and unit count |
SYNTH_MEAREC_TETRODE | 40 / 4ch / 10min | A. Buccino | Simulated using MEAREC, varying SNR and unit count |
SYNTH_MONOTRODE | 111 / 1ch / 10min | Q. Quiroga | Simulated by Quiroga lab by mixing averaged real spike waveforms |
SYNTH_VISAPY | 6 / 30ch / 5min | G. Einevoll | Generated using VISAPy simulator |
Human curated | |||
MANUAL_FRANKLAB | 21 / 4ch / 10-40min | L. Frank | Three manual curations of the same recordings |