Table 2.
Ergot resistance QTL identified using inclusive composite interval mapping (ICIM) in the Greenshank × AC Avonlea recombinant inbred line (RIL) population
| QTL | Traita | LODb | Chrom. location | Peak position/CM | Left marker | Right marker | % variance explained | Add | LOD1 leftc | LOD1 rightc |
|---|---|---|---|---|---|---|---|---|---|---|
| QCp.aafc.RIL-1B | HD_Ca_RIL | 3.40 | 1B | 72.8 | Tdurum_contig77676_464 | RAC875_c8878_232 | 4.2 | 0.316 | 71.35 | 74.35 |
| QCp.aafc.RIL-2A | TW_Ca_RIL | 5.50 | 2A | 9.268 | Ku_c28953_422 | Ku_c10387_272 | 31.9 | 0.222 | 8.52 | 9.32 |
| HD_Ca_RIL | 19.56 | 9.868 | Kukri_c79633_88 | Excalibur_rep_c107890_89 | 37.8 | 0.940 | 9.42 | 10.12 | ||
| %Inf_Ca_RIL | 5.22 | 9.268 | Ku_c10387_272 | Ku_c28953_422 | 33.8 | 0.795 | 8.52 | 9.32 |
aTrait names refer to honeydew production levels (HD), total sclerotial weight (TW) per spike, and percentage of infected flowers (%Inf) that formed sclerotia
bLOD significance threshold for ICIM was 3.35
cLOD1 left and LOD1 right refer to the LOD1 confidence interval