Antibodies |
|
M5E2 (V500) [anti-CD14] |
Becton Dickinson |
561391 (RRID:AB_10611856) |
HIB19 (V500) [anti-CD19] |
Becton Dickinson |
561121 (RRID:AB_10562391) |
FN50 (BV605) [anti-CD4] |
Becton Dickinson |
562989 (RRID:AB_2737935) |
RPA-T8 (BV650) [anti-CD8] |
BioLegend |
301042 (RRID:AB_2563505) |
FN50 (PE-CF594) [anti-CD69] |
Becton Dickinson |
562617 (RRID:AB_2737680) |
Ber-ACT35 (PE-Cy7) [anti-OX40] |
Biolegend |
350012 (RRID:AB_10901161)a |
4B4-1 (APC) [anti-CD137] |
BioLegend |
309810 (RRID:AB_830672) |
OKT3 (AF700) [anti-CD3] |
Biolegend |
317340 (RRID:AB_2563408) |
G043H7 (BV421) [anti-CD45RA] |
BioLegend |
353207 (RRID:AB_10915137) |
4S.B3 (FITC) [anti-IFNγ] |
Thermo Fisher Scientific |
11-7319-82 (RRID: AB_465415) |
GB11 (PE) [anti-Granzyme B] |
Thermo Fisher Scientific |
12-8899-41 (RRID: AB_1659718) |
Mab11 (PeCy7) [anti-TNFα] |
ebioscience |
25-7349-82 (RRID:AB_469686) |
JES3-19F1 (APC) [anti-IL-10] |
BioLegend |
506807 (RRID:AB_315457) |
3D12 (APC ef780) [anti-CCR7] |
eBioscience |
47-1979-42 (RRID:AB_1518794) |
B56 (FITC) [anti-KI67] |
Becton Dickinson |
556026 (RRID:AB_396302) |
SK3 (percp efluor710) [anti-CD4] |
Invitrogen |
46-0047-42 (RRID:AB_1834401) |
GB11 (af647) [anti-GzmB] |
Biolegend |
515406 (RRID:AB_2566333) |
MHM-88 (af700) [anti-IgM] |
Biolegend |
314538 (RRID:AB_2566615) |
O323 (APC cy7) [anti-CD27] |
Biolegend |
302816 (RRID:AB_571977) |
IA6-2 (PE) [anti-IgD] |
Becton Dickinson |
555779 (RRID:AB_396114) |
HCD56 (PE Dazzle) [anti-CD56] |
Biolegend |
318348 (RRID:AB_2563564) |
HIB19 (Cy5) [anti-CD19PE] |
Biolegend |
302210 (RRID:AB_314240) |
HIT2 (PECy7) [anti-CD38] |
Invitrogen |
25-0389-42 (RRID:AB_1724057) |
J252D4 (bv421) [anti-CXCR5] |
Biolegend |
356920 (RRID:AB_2562303) |
63D3 (bv510) [anti-CD14] |
Biolegend |
367123 (RRID:AB_2716228) |
HI100 (bv570) [anti-CD45RA] |
Biolegend |
304132 (RRID:AB_2563813) |
G025H7 (bv605) [anti-CXCR3] |
Biolegend |
353728 (RRID:AB_2563157) |
2H7 (bv650) [anti-CD20] |
Biolegend |
302336 (RRID:AB_2563806) |
G043H7 (bv711) [anti-CCR7] |
Biolegend |
353228 (RRID:AB_2563865) |
EH12.2H7 (bv786) [anti-PD-1] |
Biolegend |
329930 (RRID:AB_2563443) |
UCHT1 (buv395) [anti-CD3] |
Becton Dickinson |
563546 (RRID:AB_2744387) |
Live/dead (UV) [Zombie] |
Biolegend |
423108 |
11A9 (buv496) [anti-CCR6] |
Becton Dickinson |
612948 (RRID:AB_2833076) |
3G8 (buv737) [anti-CD16] |
Becton Dickinson |
612786 (RRID:AB_2833077) |
SK1 (buv805) [anti-CD8] |
Becton Dickinson |
612889 (RRID:AB_2833078) |
LEGENDplex 13-plex kit |
Biolegend |
740809 |
|
Biological Samples |
|
Healthy donor blood samples |
Carter BloodCare |
http://www.carterbloodcare.org/ |
Healthy donor blood samples |
LJI Clinical Core |
https://www.iedb.org/ |
Convalescent donor blood samples |
UC San Diego Health |
http://www.health.ucsd.edu/ |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Synthetic peptides |
Synthetic Biomolecules (aka A&A) |
http://www.syntheticbiomolecules.com/ |
SARS-CoV-2 Receptor Binding Domain (RBD) protein |
Stadlbauer et al., 2020 |
N/A |
|
Critical Commercial Assays |
|
CoronaCheck COVID-19 Rapid Antibody Test Kit |
20/20 BioResponse |
https://coronachecktest.com/ |
|
Deposited Data |
|
Wuhan-Hu-1 RNA isolate |
NCBI nuccore database |
GenBank: MN_908947
|
ORF10 protein |
NCBI protein database |
NCBI: YP_009725255.1
|
Nucleocapsid phosphoprotein |
NCBI protein database |
NCBI: YP_009724397.2
|
ORF8 protein |
NCBI protein database |
NCBI: YP_009724396.1
|
ORF7a protein |
NCBI protein database |
NCBI: YP_009724395.1
|
ORF6 protein |
NCBI protein database |
NCBI: YP_009724394.1
|
membrane glycoprotein |
NCBI protein database |
NCBI: YP_009724393.1
|
envelope protein |
NCBI protein database |
NCBI: YP_009724392.1
|
ORF3a protein |
NCBI protein database |
NCBI: YP_009724391.1
|
surface glycoprotein |
NCBI protein database |
NCBI: YP_009724390.1
|
orf1ab polyprotein |
NCBI protein database |
NCBI: YP_009724389.1
|
|
Software and Algorithms |
|
IEDB |
Vita et al., 2019 |
https://www.iedb.org |
IEDB-AR (analysis resource) |
Dhanda et al., 2019 |
http://tools.iedb.org |
NetMHCpan EL 4.0 |
Jurtz et al., 2017 |
http://tools.iedb.org/mhci/ |
IEDB |
Vita et al., 2019 |
https://www.iedb.org |
Tepitool |
Paul et al., 2016, Paul et al., 2015
|
http://tools.iedb.org/tepitool/ |
FlowJo 10 |
FlowJo |
https://www.flowjo.com/ |
GraphPad Prism 8.4 |
GraphPad |
https://www.graphpad.com/ |
LEGENDplex v8.0 |
Biolegend |
https://www.biolegend.com/ |