| cp: | Chloroplast; |
| IRs | inverted-repeats; |
| IRLC: | IR lacking clade; |
| SNP: | single nucleotide polymorphisms; |
| In/Dels: | insertions/deletions; |
| ORF: | open reading frame; |
| SSC: | small single-copy region; |
| LSC: | large single-copy region; |
| NGS: | next generation sequencing; |
| Pi: | nucleotide diversity; |
| Ka: | non-synonymous; |
| Ks: | synonymous; |
| SSRs: | simple sequence repeats; |
| RSCU: | the relative synonymous codon usage analysis; |
| Tv: | transversion; |
| Tn: | transition; |
| CDS: | coding sequences; |
| CNS: | non-coding sequences; |
| UTR: | untranslated regions |
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