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. 2020 May 20;21:369. doi: 10.1186/s12864-020-06778-6

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Recent recombination of two X. fastidiosa subspecies in Costa Rica. Colors indicate phylogenetically distinct X. fastidiosa lineages: X. fastidiosa subsp. pauca (red), X. fastidiosa subsp. fastidiosa (group 1, blue), and X. fastidiosa subsp. fastidiosa (group 2, green). a. Circular plot of strain-specific recombination events. Each line represents a recombinant event, with the width and placement of the line indicating recombinant segment size and its alignment position, respectively; b. FastGEAR recombination plot showing donor/recipient sequences and the position of the recombinant event in the alignment; c. Heatmap showing the number of donor/recipient interactions among strains