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. 2020 May 20;21:369. doi: 10.1186/s12864-020-06778-6

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Brazil and Costa Rica lineage- and strain-specific recombination circular plots. Orange box includes isolates representing the two monophyletic clades/subspecies found within Costa Rica: X. fastidiosa subsp. fastidiosa (Psidium spp., Vinca spp. and Coffea spp.) and X. fastidiosa subsp. pauca (Nerium oleander and Coffea spp.). Green box includes isolates representing the phylogenetic diversity of X. fastidiosa subsp. pauca found in Brazil: the monophyletic citrus clade, the paraphyletic coffee clade, and the individual Hibiscus spp. and Prunus domestica isolates. Colors indicate isolates obtained from different host plant species. Costa Rica: Psidium spp. (red), Vinca spp. (purple), Coffea spp. (brown), Nerium oleander (orange). Brazil: Coffea spp. (brown), Citrus spp. (pale orange), Hibiscus spp. (pale pink), and Prunus domestica (dark pink). Circular plot shows recombination between strains and recombination between lineages. Each line represents a recombinant event, with the width and placement of the line indicating recombinant segment size and alignment position