Table 2.
Number of genes in the core, soft-core, shell, and cloud genomes of X. fastidiosa subsp. fastidiosa and X. fastidiosa subsp. pauca isolates included in this study, and subsp. fastidiosa and subsp. pauca isolates originating from Costa Rica. The values reported by Vanhove et al. [9] and Vanhove et al. [8] are also included
| Subspecies | Core | Soft-core | Shell | Cloud |
|---|---|---|---|---|
| This study | ||||
| X. fastidiosa subsp. pauca (N = 101) | 514 | 1189 | 860 | 6360 |
| X. fastidiosa subsp. fastidiosa (N = 167) | 1506 | 248 | 875 | 5246 |
| This study, Costa Rica (N = 15) | 1416 | 0 | 2090 | 1289 |
| X. fastidiosa subsp. pauca (N = 3) | 2089 | 78 | 107 | |
| X. fastidiosa subsp. fastidiosa (N = 12) | 1643 | 211 | 688 | 1094 |
| Vanhoveet al.2019 | ||||
| X. fastidiosa subsp. pauca (N = 20) | 1516 | 143 | 2096 | 1123 |
| X. fastidiosa subsp. fastidiosa (N = 25) | 1282 | 460 | 867 | 790 |
| Vanhoveet al.2020 | ||||
| X. fastidiosa subsp. fastidiosa (N = 120) | 1073 | 816 | 756 | 1938 |