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. 2020 May 20;9(5):giaa048. doi: 10.1093/gigascience/giaa048

Figure 11:

Figure 11:

Finding similar regions in reference and target sequences. Smash++ first finds the regions in the target that are similar to the reference and then finds the regions in the reference that are similar to the detected target regions. This procedure is performance for both regular and inverted homologies.