Table 3.
MolProbity scores for the modeled proteins
| Protein name | FeigLab | AlphaFold | Refined AlphaFold | Zhang |
|---|---|---|---|---|
| nsp2 | 1.34 (0.9 / 0.7% / 89.3%) |
1.68 (4.8 / 1.7% / 96.3%) |
0.55 (0.1 / 0.4% / 98.2%) |
4.41 (281.87 / 7.2% / 68.6%) |
| nsp4 | 1.13 (0.3 / 0.9% / 90.6%) |
1.30 (3.4 / 1.6% / 98.0%) |
0.73 (0.3 / 0.0% / 97.3%) |
4.20 (216.46 / 6.6% / 76.1%) |
| nsp6 | 0.94 (0.4 / 0.0% / 95.8%) |
1.28 (1.8 / 2.9% / 98.2%) |
0.66 (0.0 / 0.0% / 97.1%) |
5.12 (292.67 / 34.9% / 38.5%) |
| PL-PRO (nsp3) | 1.04 (0.5 / 0.5% / 94.6%) |
1.25 (2.2 / 2.2% / 98.9%) |
0.77 (0.9 / 0.0% / 98.6%) |
4.18 (215.81 / 6.5% / 77.2%) |
| ORF3a | 1.20 (0.5 / 0.0% / 90.5%) |
2.40 (6.0 / 5.1% / 90.7%) |
1.09 (0.6 / 0.0% / 94.3%) |
4.10 (66.68 / 12.9% / 52.4%) |
| Membrane glycoprotein | 0.74 (0.0 / 0.5% / 96.4%) |
1.38 (1.9 / 3.7% / 99.0%) |
0.50 (0.0 / 0.0% / 98.4%) |
4.55 (95.65 / 28.6% / 44.1%) |
| ORF6 | 0.50 (0.0 / 0.0% / 98.3%) |
N/A | N/A | 4.02 (31.79 / 25.0% / 49.2%) |
| ORF8 | 1.38 (1.0 / 0.9% / 89.1%) |
N/A | N/A | 4.45 (86.1 / 24.3% / 45.4%) |
| ORF10 | 1.00 (0.0 / 0.0% / 91.7%) |
N/A | N/A | 3.50 (17.6 / 17.1% / 72.2%) |
| ORF7b | 0.50 (0.00 / 0.0% / 100.0%) |
N/A | N/A | N/A |
*
Detailed geometric features for MolProbity score, clash score, rotamer outlier, and residues with backbone torsions in Ramachandran-favored regions are shown in parentheses. The clash score is the number of clashes per 1,000 atoms. Rotamer outlier and Ramachandran favored are percentages of residues with rotamer outliers and favored Ramachandran angles, respectively.