Table 4.

Antibiotic resistance genes (ABR) found in C. campinensis strain S14E4C by PATRIC 3.5.38 annotation pipeline

ABR mechanism	Genes
Antibiotic activation enzyme	katG
Antibiotic target in susceptible species	alr, ddl, dxr, ef-g, ef-tu, folA, dfr, folP, gyrA, gyrB, inhA, fabI, iso-tRNA, kasA, murA, rho, rpoB, rpoC, s10p, s12p
Antibiotic target protection protein	bcrC
Efflux pump conferring antibiotic resistance	emrAB-OMF, emrAB-TolC, mdtABC-OMF, mdtABC-tolC, mexAB-oprM
Gene conferring resistance via absence	gidB
Protein altering cell wall charge conferring antibiotic resistance	gdpD, pgsA
Regulator modulating expression of antibiotic resistance gene	h-ns, oxyR