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. 2020 May 20;10:8358. doi: 10.1038/s41598-020-65253-0

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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C. difficile growth- and cytotoxicity-associated bacterial community characteristics. Timeline of C. difficile growth (log10 CFU/mL) (a) and cytotoxicity (log10 Relative Cytotoxicity Units (RCU)/C. difficile CFU) shown for cell lines HT-29 and Vero, separately (c). Dotted line indicates exposure to clindamycin during the modulation phase. b,d Pearson analysis of OTU correlation with C. difficile growth (b) and cytotoxicity (d). Red color indicates negative correlation with either C. difficile growth or cytotoxicity while blue indicates a positive correlation.