Table 2.
List of the main software for dMRI data processing and analysis available.
| Software | Diffusion method | Link | Capabilities |
|---|---|---|---|
| FMRIB's Diffusion Toolbox (FDT) in FMRIB Software Library (FSL) | DTI | https://fsl.fmrib.ox.ac.uk/fsl/fslwiki | Preprocessing, fitting, and tractography |
| Tract-Based Spatial Statistics (TBSS) in FSL | DTI | https://fsl.fmrib.ox.ac.uk/fsl/fslwiki | Skeletonized analysis |
| Camino | DTI, tractography, multifiber and HARDI reconstruction techniques | http://camino.cs.ucl.ac.uk/index.php?n=Main.HomePage | Preanalysis and postanalysis |
| Tolerably obsessive registration and tensor optimization indolent software ensemble (TORTOISE) | DTI | https://tortoise.nibib.nih.gov/ | Prefitting and fitting |
| Analysis of Functional NeuroImages (AFNI) | DTI | https://afni.nimh.nih.gov/ | Fitting |
| DSI Studio | DTI, GQI, QSDR, DSI, connectometry, tractography | http://dsi-studio.labsolver.org/ | Preprocessing and data analysis |
| DTI Studio | DTI | http://lbam.med.jhmi.edu/ | Fitting |
| Explore DTI | DTI, tractography | http://www.exploredti.com/ | DTI MRI and fiber tractography |
| MRtrix | Tractography | https://www.mrtrix.org/ | Fiber tractography analysis |
| TrackVis | Tractography for DTI/DSI/HARDI/Q-Ball | http://www.trackvis.org/ | Fiber tractography analysis |
| Brain Connectivity Toolbox (BCT)—(MATLAB) | Connectivity | https://sites.google.com/site/bctnet/ | Connectivity analysis |
| DTI and Fiber Tracking (MATLAB) | DTI, tractography | https://www.mathworks.com/matlabcentral/fileexchange/21130-dti-and-fiber-tracking | Fitting and fiber tracking |
| DTIprep | DWI/DTI quality control and preparation | https://www.nitrc.org/projects/dtiprep | Preprocessing |