Table 2.
Genotype data shows an association of LRRTM4 to ascites syndrome in female REL line birds
| All | Male | Female | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | n | Sus | Res | P-val. | n | Sus | Res | P-val. | n | Sus | Res | P-val. |
| AG | 246 | 45.6 | 54.4 | 0.0083 | 101 | 41.6 | 58.4 | 0.24 | 113 | 47.8 | 52.2 | 0.047 |
| RR | 426 | 31.0 | 69.0 | 0.13 | 192 | 27.7 | 72.3 | 0.21 | 157 | 32.7 | 67.3 | 0.83 |
| GA | 197 | 34.5 | 65.5 | 1.76 | 86 | 36.5 | 63.5 | 1.65 | 81 | 29.6 | 70.4 | 0.52 |
Data is based on SNP genotypes using a qPCR assay. Genotype is the composite of the two SNPs on chromosome 28 assayed with P1 and P2 (Table 4) (bases: 4,405,679 and 4,405,681). For each genotype the percentage of each phenotype (Sus=susceptible; Res=resistant) is presented along with the adjusted P-value (P-val.) for All samples, and each gender. Discrepancies in totals result from missing gender data for some samples. Phenotypes are Sus (susceptible) or Res (resistant)