| Bacterial and Virus Strains |
|
|
E. coli BL21(DE3) |
Thermo Scientific |
Cat#EC0014 |
| pDENV-Luc infectious clone |
Marceau et al. (2016) |
N/A |
| pDENV-Luc replicon |
Marceau et al. (2016) |
N/A |
|
| Chemicals, Peptides and Recombinant Proteins |
|
| DMEM |
Gibco |
Cat#11995065 |
| Trypsin/EDTA |
Gibco |
Cat#25300054 |
| Penicillin-Streptomycin |
Gibco |
Cat#15140122 |
| Glutamine |
Gibco |
Cat#25030081 |
| Fetal Bovine Serum |
HyClone |
Cat#SH30396.03 |
| Electroporation Buffer for replicon |
Teknova |
Cat#E0399 |
| XbaI Restriction Enzyme |
New England BioLabs |
Cat#R0145S |
| Lactate dehydrogenase, porcine heart (LDH) |
EMD Millipore |
Cat#427211 |
| Pyruvate kinase, rabbit muscle type III (PK) |
Sigma-Aldrich |
Cat#P9136 |
| Adenosine triphosphate disodium trihydrate (ATP) |
VMR Life Science |
Cat#0220 |
| β-Nicotinamide adenine dinucleotide, reduced disodium salt hydrate (NADH) |
Santa Cruz |
Cat# sc-205762A |
| Phosphoenolpyruvate monopotassium salt (PEP) |
Sigma-Aldrich |
Cat#P7127 |
| Cytidine 5’-monophospahte disodium salt (CMP) |
Sigma-Aldrich |
Cat#C1006 |
| Uridine |
Sigma-Aldrich |
Cat#U3750 |
| LB Broth |
Fisher BioReagents |
Cat#BP97235 |
| Isopropyl-1-thio-b-D-galacto-pyranoside (IPTG) |
Thermo Fisher Scientific |
Cat#R0392 |
| R1479 |
MedChemExpress |
Cat#HY-10444 |
| Dipyridamole (DPY) |
MP Biomedicals |
Cat#0215372205 |
| D-ribose |
Chem Impex |
Cat#50494709 |
| Tetrabutylammonium fluoride solution (TBAF), 1.0M |
Sigma-Aldrich |
Cat#216143 |
| Diethyl azodicarboxylate solution (DEAD), 40 wt.% |
Sigma-Aldrich |
Cat#563110 |
| Triphenylphosphine (PPh3) |
Sigma-Aldrich |
Cat#T84409
|
| Uracil |
Sigma-Aldrich |
Cat#U0750 |
| 5-Fluorouracil |
Sigma-Aldrich |
Cat#F6627 |
| Thymine |
AK Scientific |
Cat#J91030 |
| 5-Iodouracil |
AK Scientific |
Cat#K165 |
| Ammonia, ca. 7N solution in methanol |
Sigma-Aldrich |
Cat#499145 |
| Silver (I) oxide (Ag2O) |
Sigma-Aldrich |
Cat#226831 |
| Methyl iodide (MeI) |
EMD Millipore |
Cat#IX0185 |
| Diethylaminosulfur trifluoride (DAST) |
Oakwood |
Cat#002323 |
| Methanesulfonyl chloride (MsCl) |
Sigma-Aldrich |
Cat#471259 |
| Triethylamine (NEt3) |
Thermo Fisher Scientific |
Cat#04885 |
| Acetyl chloride (AcCl) |
Sigma-Aldrich |
Cat#114189 |
| Palladium hydroxide on carbon [Pd(OH)2/C], 5 wt.% |
Acros Organic |
Cat#199620100 |
| Cyclohexene |
Sigma-Aldrich |
Cat#29240 |
| Sodium azide (NaN3) |
Sigma-Aldrich |
Cat#71289 |
| 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES) |
Fisher BioReagents |
Cat#BP310-100 |
| Tris(hydroxymethyl)aminomethane base (Tris) |
Fisher BioReagents |
Cat#BP152-1 |
| Dithiothreitol (DTT) |
Fisher BioReagents |
Cat#BP172-25 |
| Magnesium chloride (MgCl2) |
Fisher Chemical |
Cat#M33-500 |
| Potassium chloride (KCl) |
Fisher Chemical |
Cat#P217-500 |
| Medronic acid (InfinityLab Deactivator Additive) |
Agilent |
Cat#5191-3940 |
| Adenosine 15N5 5’-monophosphate disodium salt |
Sigma-Aldrich |
Cat#662658 |
| Uridine 15N2 5’-monophosphate sodium salt |
Sigma-Aldrich |
Cat#662666 |
|
| Critical Commercial Assays |
|
| MEGAscript T7 Transcription Kit |
Invitrogen |
Cat#AM1334 |
| m7G(5')ppp(5')G RNA Cap Structure Analog |
New England BioLabs |
Cat#S1404S |
| CellTiter-Glo |
Promega |
Cat#G7570 |
| Renilla-Glo |
Promega |
Cat#E2710 |
| Renilla |
Promega |
Cat#E2820 |
|
| Experimental Models: Cell Lines |
|
| A549 |
ATCC |
Cat#CCL-185 |
| Vero E6 |
ATCC |
Cat#CRL-1586 |
|
| Recombinant DNA |
|
| pET21a-UCK2 expression plasmid |
Okesli-Armlovich et al. (2019) |
N/A |
| pET28-CMPK1 expression plasmid |
Deans et al. (2016) |
N/A |
|
| Software |
|
| Prism 8.0 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
| ChemDraw Professional 17.1 |
PerkinElmer |
https://www.perkinelmer.com/category/chemdraw |
| MNova 12.0 |
Mestrelab |
https://mestrelab.com/download_file/mnova-12-0-0/ |
|
| Other |
|
| Centrifugal Filter Unit |
Amicon |
Cat#UFC900308 |
| Hi Trap Q anion exchange column |
GE Healthcare Life Sciences |
Cat#17115301 |