Table 3.

GSEA identified PTPN6-related signaling pathways in BC.

MSigDB collection	Gene set name	NES	NOM P val	FDR q val
c2.cp.biocarta.v6.1.symbols.gmt	PATHWAYS_IN_CANCER	2.407	<0.0001	<0.0001
h.all.v6.1.symblos.gmt	TGF_BETA_SIGNALING_PATHWAY	2.403	<0.0001	<0.0001
	JAK_STAT_SIGNALING_PATHWAY	2.192	<0.0001	4.75E-04
	WNT_SIGNALING_PATHWAY	2.129	<0.0001	0.0015
	TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY	2.083	<0.0001	0.0018
	SMALL_CELL_LUNG_CANCER	2.054	<0.0001	0.0021
	PROSTATE_CANCER	2.050	<0.0001	0.0021
	OXIDATIVE_PHOSPHORYLATION	-2.052	0.006	0.0171
	T_CELL_RECEPTOR_SIGNALING_PATHWAY	1.922	0.012	0.0073
	MTOR_SIGNALING_PATHWAY	1.914	0.0061	0.0075