Figure 4:
The distribution of states for intermediates as a function of intermediate size (s) and number of dimer-dimer contacts (c), based on umbrella-sampled MC simulations. (a) 2D sampling assuming zero free energy per contact. The colors and contours represent the number of different configurations, Ω4,s,c, for particles with a given c and s values. (b) The same distribution of states from (a) as a function of size (s) and degree of connectivity, DC (Eq. 1). The color-scale is logarithmic. (c) 1D distribution of 76-dimer intermediates based on zero energy simulation. (d) The relative probability of intermediates with respect to the lowest energy intermediate when Boltzmann’s factor was introduced for the case where the association free energy was set to −7 kBT.