TABLE 4.
Mapping results and statistical descriptions of each genomic classes.
| Genomic class | # of SNPs1 | MAF | Mean MAF (SD) | # of haploblocks | # of represented genome feature2 |
| IGR class | 449,918 (67.03%) | 0.009–0.5 | 0.26 (0.15) | 87,407 | |
| Gene class | 221,286 (32.97%) | 0.009–0.5 | 0.26 (0.15) | 45,748 | 16,286 (66.30%) |
| Exon class | 9814 (1.46%) | 0.010–0.5 | 0.25 (0.15) | 9287 | 9287 (4.08%) |
| CDS class | 7024 (1.05%) | 0.010–0.5 | 0.25 (0.14) | 6799 | 6799 (3.17%) |
| UTR class | 2614 (0.39%) | 0.010–0.5 | 0.25 (0.15) | 2409 | 2409 (7.26%) |
| All markers | 671,204 | 0.009–0.5 | 0.26 (0.15) | 115,005 |
1The number of SNPs annotated in five genomic classes, and their percentage of the whole genome-wide markers is indicated in parentheses. 2The number of genomic features represented by SNPs in the corresponding genomic class, and their percentage of the total genome features of the reference genome in parentheses. The bovine reference genome contains 24,559 genes, 227,610 exons, 214,584 CDS, and 33,137 UTR. # means “the number.”