TABLE 3.
The identify between the Pacific white shrimp and other species in individual domain.
Region | SP |
LBD 1 |
EGFD 1 |
LBD 2 |
|||||||||||
Special | Location | Length | Identity | Location | Length | Identity | Class A | Location | Length | Identity | YWTD + EGF | Location | Length | Identity | Class A |
G. gallus | 1–46 | 46 | 23% | 50–375 | 326 | 28% | 8 | 376–770 | 395 | 15% | 5 + 3 | 50–375 | 326 | 37% | 8 |
X. laevis | 1–27 | 27 | 17% | 31–356 | 326 | 30% | 8 | 358–750 | 393 | 15% | 5 + 3 | 31–356 | 326 | 36% | 8 |
M. americana | 1–25 | 25 | 13% | 29–354 | 326 | 27% | 8 | 356–749 | 394 | 16% | 5 + 3 | 29–354 | 326 | 37% | 8 |
S. exigua | 1–17 | 17 | 8% | 29–217 | 189 | 28% | 4 | 218–938 | 725 | 21% | 6 + 4 | 942–1283 | 342 | 32% | 7 |
A. aegypti | 1–30 | 30 | 19% | 44–251 | 208 | 32% | 5 | 253–951 | 699 | 27% | 7 + 4 | 955–1301 | 347 | 34% | 8 |
D. melanogaster | NA | NA | NA | 89–306 | 218 | 31% | 5 | 309–1026 | 718 | 25% | 7 + 4 | 1030–1377 | 348 | 32% | 8 |
P. monodon | 1–20 | 20 | 44% | 77–279 | 203 | 88% | 5 | 280–978 | 699 | 87% | 8 + 4 | 981–1327 | 347 | 80% | 8 |
L. vannamei | 1–34 | 34 | 100% | 93–295 | 203 | 100% | 4 | 296–991 | 696 | 100% | 8 + 4 | 994–1332 | 339 | 100% | 8 |
Region |
EGFD 2 |
OLSD |
TM |
Cyto |
Total length | Overall identity | |||||||||
Special | Location | Length | Identity | YWTD + EGF | Location | Length | Identity | Location | Length | Identity | Location | Length | Identity | ||
G. gallus | 376–770 | 385 | 18% | 5 + 3 | NA | NA | NA | 787–809 | 23 | 17% | 810–863 | 54 | 12% | 863 | 11% |
X. laevis | 358–750 | 393 | 18% | 5 + 3 | 751–792 | 42 | 9% | 793–815 | 23 | 26% | 816–869 | 54 | 12% | 869 | 11% |
M. americana | 356–749 | 394 | 18% | 5 + 3 | 750–767 | 17 | 15% | 768–790 | 23 | 17% | 791–844 | 54 | 13% | 844 | 11% |
S. exigua | 1284–1662 | 379 | 19% | 3 + 3 | NA | NA | NA | 1689–1711 | 23 | 12% | 1712–1814 | 103 | 11% | 1814 | 22% |
A. aegypti | 1302–1689 | 388 | 20% | 3 + 3 | 1690–1721 | 31 | 18% | 1722–1744 | 23 | 16% | 1745–1847 | 103 | 11% | 1847 | 24% |
D. melanogaster | 1378–1770 | 393 | 16% | 3 + 3 | NA | NA | NA | 1799–1820 | 22 | 37% | 1821–1984 | 164 | 8% | 1984 | 22% |
P. monodon | 1328–1769 | 442 | 81% | 3 + 4 | 1770–1783 | 13 | 85% | 1784–1806 | 23 | 86% | 1807–1941 | 135 | 92% | 1941 | 84% |
L. vannamei | 1333–1774 | 442 | 100% | 2 + 4 | 1775–1787 | 12 | 100% | 1788–1810 | 23 | 100% | 1811–1943 | 133 | 100% | 1943 | 100% |