KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
HA Tag Mouse Monoclonal Antibody (2-2.2.14) | Invitrogen | Cat#26183 |
β-Actin Rabbit Monoclonal Antibody | LI-COR | Cat# P/N 926-42210 |
HSF1 Antibody #4356 | Cell Signaling | Cat# 4356T |
Anti-Iba1, Rabbit (for Immunocytochemistry) | FujiFilm Wako Chemicals | Cat# 019-19741 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 | Invitrogen | Cat# A-11008 |
IRDye® 680RD Goat anti-Mouse IgG Secondary Antibody | LI-COR | Cat# P/N: 926-68070 |
IRDye® 800CW Goat anti-Rabbit IgG Secondary Antibody | LI-COR | Cat# P/N: 926-32211 |
Bacterial and Virus Strains | ||
Lentivirus: R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
Lentivirus: I5F/R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
Lentivirus: R12Y/M16L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
Lentivirus: R12Y/F31L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
Lentivirus: R12Y/G67S/I94L/Y100I ecDHFR.YFP.HA | This paper | N/A |
Lentivirus: ecDHFR.dn-cHSF1 | This paper | N/A |
AAV Virus: AAV2/2 MAX NanoLuc 2A ecDHFR FLuc | Packaged by UNC Viral Vector Core | N/A |
AAV Virus: AAV2/8 NanoLuc 2A ecDHFR.Fluc | Packaged by UNC Viral Vector Core | N/A |
Bacteria: wild-type S. aureus | Marrafini Laboratory, Rockefeller University | RN4220 |
Bacteria: wild-type E. coli | Toprak Laboratory, UT Southwestern | BW25113 |
Chemicals, Peptides, and Recombinant Proteins | ||
Dimethyl Sulfoxide (DMSO) | Fisher Scientific | Cat# BP231-100 |
Carbowax™ PEG 400 (NF) | Fisher Scientific | Cat# P167-1 |
Tween™ 80 | Fisher Scientific | Cat# BP338-500 |
Tween™ 20 | Fisher Scientific | Cat# BP337-100 |
Cremophor EL | Millipore Sigma | Cat# 238470 |
Dextrose Anhydrous (Crystalline Granules/Molecular Biology) | Fisher Scientific | Cat# BP350-500 |
HBSS | Sigma | Cat# H6648 |
D-Luciferin Sodium Salt | Gold Biotechnology | Cat# LUCNA |
0.9% Sodium Chloride Injection, USP | Hospira | N/A |
Ponceau S solution | Sigma | Cat# P7170 |
2-aminoquinazoline | Sigma | Cat# CDS008332 |
2-amino-3H-quinazolin-4-one | Sigma | Cat# CDS020257 |
2,4-diaminopyrimidine | Sigma | Cat# 68231 |
2,4-diamonopyrimidine-5-carbaldehyde | Sigma | Cat# CDS013913 |
Dihydrofolic acid | Sigma | Cat# D7006 |
pemetrexed | Tocris Bioscience | Cat# 6185 |
Proguanil HCl | Acros Organics | Cat# 637-32-1 |
raltitrexed | Apex Bioscience | Cat# B1476 |
RG3039 | Butchbach Laboratory, University of Delaware | N/A |
D156844 | Butchbach Laboratory, University of Delaware | N/A |
Trimethoprim | Sigma | Cat# T7883 |
Methotrexate | Fisher Scientific | Cat# BP2665 |
Triamterene | Selleck Chemicals | Cat# S4080 |
Ormetoprim, 98% | J&K | Cat# 403370 |
Pyrimethamine | Tocris Bioscience | Cat# 3918 |
SW000198-2 | ChemDiv | Cat# 0075-0058 |
Pralatrexate | Apex Bio | Cat# A4350 |
Diaveridine | Santa Cruz | Cat# SC-205646 |
Aminopterin | Sigma | Cat# A3411 |
Cycloguanil | Cayman Chemical | Cat# 16861 |
2,4-diaminoquinazoline | Alfa Aesar | Cat# L13783 |
WR99210 | Sigma | Cat# W1770 |
GW2580 | Apex Bio | Cat# A1655 |
TC-P 262 | Tocris Bioscience | Cat# 4386 |
Epiblastin A | Sigma | Cat# SML1647 |
TG100-115 | Selleck Chemicals | Cat# S1352 |
7,8-DIETHOXY-QUINAZOLINE-2,4-DIAMINE | Sigma | Cat# R396540 |
HZ-1157 | AChemBlock | Cat# O33918 |
Critical Commercial Assays | ||
Pierce™ BCA Protein Assay Kit | ThermoFisher Scientific | Cat# 23227 |
Dihydrofolate Reductase Assay Kit | Sigma | Cat# CS0340 |
Maxi Prep Plus Kit | Qiagen | Cat# 12943 |
Deposited Data | ||
E. coli DHFR substrate complex with dihydrofolate | Cao et al., 2018 | PDB ID: 6CXK |
E. coli DHFR complex with methotrexate | Sawaya and Kraut, 1997 | PDB ID: 1RA3 |
M. tuberculosis DHFR in complex with cycloguanil | Dias et al., 2014 | PDB ID: 4KNE |
Experimental Models: Cell Lines | ||
Human: HEK-293A | Life Technologies | Cat# R70507 |
Human: HeLa Tet-On | Takara | Cat# 631183 |
Human: ARPE-19 | American Type Culture Collection | Cat# CRL-2302 |
ARPE-19 R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
ARPE-19 I5F/R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
ARPE-19 R12Y/M16L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
ARPE-19 R12Y/F31L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
ARPE-19 R12Y/G67S/I94L/Y100I ecDHFR.YFP.HA | This paper | N/A |
HeLa R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
HeLa ecDHFR.dn-cHSF1 | This paper | N/A |
Experimental Models: Organisms/Strains | ||
Mouse: Wild Type Balb/c | Jackson Laboratories, private stock courtesy of Lihua Marmorstein | N/A |
Oligonucleotides | ||
Primer: I5F ecDHFR Forward 5’ GATCAGTCTGTTTGCGGCGTTAG ‘3 |
Sigma | N/A |
Primer: I5F ecDHFR Reverse 5’ ATGGTGGCGGATCCAGTC ‘3 |
Sigma | N/A |
Primer: I94L ecDHFR Forward 5’ AATCATGGTGCTTGGCGGCGG ‘3 |
Sigma | N/A |
Primer: I94L ecDHFR Reverse 5’ TCTGGTACGTCACCACAC ‘3 |
Sigma | N/A |
Primer: F31L ecDHFR Forward 5’ TCGCCTGGTTAAAACGCAACAC ‘3 |
Sigma | N/A |
Primer: F31L ecDHFR Reverse 5’ GATCGGCAGGCAGGTTCC ‘3 |
Sigma | N/A |
Primer: M16L ecDHFR Forward 5’ CGTTATCGGCCTGGAAAACGC ‘3 |
Sigma | N/A |
Primer: M16L ecDHFR Reverse 5’ TAATCTACCGCTAACGCC ‘3 |
Sigma | N/A |
Primer: CMV Forward Sequencing Primer 5’ CCAAGTACGCCCCCTATTGA ‘3 |
Sigma | N/A |
Recombinant DNA | ||
pAAV2/2 MAX (7m8, QuadYF) | Reid et al., 2017 | N/A |
pAAV2/8 | Zhu Laboratory, UT Southwestern | N/A |
pTR smCBA Nluc 2A ecDHFR Fluc | Peng et al., 2019 | N/A |
pLenti Puro R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
pLenti Puro I5F/R12Y/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
pLenti Puro R12Y/M16L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
pLenti Puro R12Y/F31L/G67S/Y100I ecDHFR.YFP.HA | This paper | N/A |
pLenti Puro R12Y/G67S/I94L/Y100I ecDHFR.YFP.HA | This paper | N/A |
pLenti Puro ecDHFR-dn.cHSF1 | Moore et al., 2016 | N/A |
Software and Algorithms | ||
GraphPad Prism | GraphPad Software, Inc | https://www.graphpad.com/scientific-software/prism/ |
CellProfiler 3.1.8 | Broad Institute | https://cellprofiler.org/releases/ |
Protein Preparation Wizard | Schrodinger LLC | https://www.schrodinger.com/protein-preparation-wizard |
Maestro v11.9.011 | Schrodinger, LLC | https://www.schrodinger.com/maestro |
SnapGene | GSL Biotech | https://www.snapgene.com/ |
Other | ||
National Cancer Institute (NCI) preclinical experimental collection | NCI | N/A |
Prestwick Chemical Library | Prestwick Chemical | http://www.prestwickchemical.com/libraries-screening-lib-pcl.html |
ad hoc portion of University of Texas Southwestern 300k collection | UT Southwestern | N/A |
eMolecules Chemical Database | eMolecules, Inc. | https://www.emolecules.com/ |
MolPort Chemical Database | MolPort | https://www.molport.com/shop/index |