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. Author manuscript; available in PMC: 2021 May 21.
Published in final edited form as: Mol Cell. 2020 Apr 24;78(4):752–764.e6. doi: 10.1016/j.molcel.2020.03.024

Table 1.

Summary of poly(A)-seq and APA candidates. See also Tables S2 and S3.

HCT116 DKO Union
pA sites Genes pA sites Genes pA sites Genes
All pA sites 32,245 13,369 25,905 13,359 35,342 14,585
Unambig. Genes 30,112 11,614
Genes with more than 1 pA site 25,420 6,922
p.adj < 0.0001 2,015 1,173
Sites used > 5% in ≥ 1 cell line 1,819 1,106
Site changes > 1.5 fold 1,163 902
> 10% shift in pA site usage 718 546