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. 2020 May 24;21:207. doi: 10.1186/s12859-020-3475-0

Table 1.

The GenBank and the sequence read archive (SRA) study accession numbers as well as details on genome size and structure of the four plastid genomes used to demonstrate the functionality of PACVr. All size and position values are given in bp. Abbreviations used: n.a. = not applicable; pos. = position

Species name GenBank SRA study Total size Pos. LSC Pos. (size) IRb Pos. (size) SSC Pos. (size) IRa
Archidasyphyllum excelsum MH899017 SRP253816 151,880 1..83,242 83,243..108,250 (25,007) 108,251..126,872 (18,621) 126,873..151,880 (25,007)
Nuphar japonica NC_045072 SRP253784 160,761 1..90,653 90,654..116,283 (25,629) 116,284..135,131 (18,847) 135,132..160,761 (25,629)
Pelargonium x hortorum NC_008454 SRP015898 217,942 1..59,710 59,711..135,457 (75,746) 135,458..142,209 (6,751) 142,210..217,942 (75,732)
Prototheca cutis NC_037480 DRP002975 51,673 n.a. n.a. n.a. n.a.