Table 1. Summary of illumina RNA-seq data.

Each row of data indicates the total reads, clean reads, total mapped clean data, Q30 (%), GC (%), and percent sequence reads mapped of every sample.

Sample	Total reads	Clean reads	Total mapped clean data* (Gb)	Q30 (%)	GC (%)	Mapped rate (%)
APEC_1	11,377,278	11,303,464	1.7G	92.84	51.33	99.43a
APEC_2	12,595,278	12,482,110	1.87G	92.86	51.46	99.39a
APEC_3	9,850,068	9,786,504	1.47G	94.91	51.45	99.72a
bEnd3_1	59,805,426	59,042,776	8.86G	92.05	50.7	92.44b
bEnd3_2	49,924,482	49,319,300	7.4G	92.1	51.22	92.46b
bEnd3_3	64,453,186	63,528,514	9.53G	91.87	50.15	92.29b
bE_AP_1	77,516,134	76,516,858	11.48G	92.15	48.91	19.16a
	79,574,798	78570978	11.79G	92.14	49.1	67.44b
bE_AP_2	77,558,096	76,635,112	11.5G	92.83	48.42	16.29a
	80,037,182	79,108,450	11.87G	92.81	48.63	69.38b
bE_AP_3	75,686,054	74,877,152	11.23G	92.91	48.65	13.96a
	78,470,990	77,655,916	11.65G	92.89	48.85	71.53b

Notes:

^*Clean data were obtained from raw data by removing reads containing adapter, ploy-N and low quality reads.

^aClean reads were mapped to Escherichia coli genome.

^bClean reads were mapped to Mus musculus genome.