Table 1.
Genes potentially involved in the GA biosynthetic pathway.
| Annotation | Transcript Number | Transcript ID | Predicted Subcellular Localization | Expression Profiles (FPKM) | Up-Regulated in Roots (Y/N) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| L1 | L2 | L3 | R1 | R2 | R3 | |||||
| AACT | 1 | Glyur000218s00011642.1 | Peroxisome | 38.32 | 42.15 | 47.59 | 105.87 | 152.71 | 143.58 | Y |
| HMGS | 1 | Glyur000195s00012841.1 | Cytoplasm | 2.35 | 2.81 | 7.56 | 173.37 | 280.56 | 276.05 | Y |
| HMGR | 4 | Glyur000037s00002618.1 | Endoplasmic Reticulum | 32.41 | 57.49 | 47.67 | 92.79 | 193.02 | 173.28 | Y |
| Glyur000135s00007303.1 | Endoplasmic Reticulum | 11.95 | 15.05 | 16.18 | 66.08 | 35.39 | 39.91 | Y | ||
| Glyur000203s00012900.1 | Endoplasmic Reticulum | 6.69 | 12.23 | 17.49 | 26.99 | 42.77 | 38.50 | Y | ||
| Glyur000682s00024324.1 | Endoplasmic Reticulum | 13.21 | 16.87 | 18.17 | 137.41 | 182.13 | 172.25 | Y | ||
| MK | 1 | Glyur000069s00004081.1 | Extracell | 5.15 | 6.75 | 6.73 | 9.61 | 6.62 | 6.40 | N |
| PMK | 1 | Glyur000343s00025703.1 | Cytoplasm | 16.23 | 9.45 | 10.92 | 5.40 | 13.19 | 13.26 | N |
| MPD | 1 | Glyur000002s00000233.1 | Cell Membrane and Extracell | 7.42 | 9.09 | 9.11 | 30.96 | 41.07 | 42.35 | Y |
| FPPS | 1 | Glyur000088s00007722.1 | Endoplasmic Reticulum and Nucleus | 5.14 | 6.08 | 11.84 | 35.58 | 40.90 | 40.94 | Y |
| SQS | 2 | Glyur000017s00002413.1 | Extracell | 21.40 | 19.05 | 24.26 | 18.33 | 48.71 | 46.67 | Y |
| Glyur000089s00008825.1 | Endoplasmic Reticulum. | 3.70 | 3.44 | 4.82 | 16.81 | 43.09 | 38.43 | Y | ||
| β-AS | 1 | Glyur001733s00027628.1 | Extracell and Nucleus | 0.97 | 2.28 | 10.35 | 45.99 | 189.49 | 162.89 | Y |
| CYP88D6 | 2 | Glyur000561s00023443.1 | Cytoplasm Endoplasmic Reticulum and Nucleus | 0.04 | 0.39 | 0.91 | 12.41 | 21.66 | 17.30 | Y |
| Glyur000561s00023451.1 | Endoplasmic Reticulum. | 0.25 | 0.64 | 2.67 | 183.15 | 327.26 | 297.26 | Y | ||
| CYP72A154 | 2 | Glyur000890s00019071.1 | Endoplasmic Reticulum. | 6.92 | 7.14 | 6.31 | 118.31 | 181.82 | 175.76 | Y |
| Glyur001936s00032203.1 | Extracell. | 10.00 | 1.51 | 7.57 | 103.78 | 167.71 | 142.77 | Y | ||
| GUCPR1 | 1 | Glyur000294s00011848.1 | Endoplasmic Reticulum. | 38.03 | 46.50 | 39.00 | 16.14 | 25.88 | 25.71 | Y |
1 “L1, L2, L3” and “R1, R2, R3” represent 3 leaves and roots samples, respectively. “Y” means yes. “N” means no.