| BLAST | Basic local alignment search tool; |
| COG | Clusters of orthologous groups; |
| DGE | Digital gene expression; |
| EST | Expressed sequence tag; |
| FDR | False discovery rate; |
| GO | Gene ontology; |
| KEGG | Kyoto Encyclopedia of Genes and Genomes Pathway; |
| NCBI | National Center for Biotechnology Information; |
| qRT-PCR | Real-time quantitative reverse transcription polymerase chain reaction; |
| RACE | Rapid amplification of cDNA ends; |
| RPKM | Number of reads per kilobase per million clean reads; |
| SAM | Shoot apical meristem |